PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

ERF

Protein Properties

Length: 145aa MW: 16395.4 Da PI: 7.0565

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01017572001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.3	2.1e-19	7	55	2	54
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr+++ +g+Wv+eIr+p + +r++lg+f tae+Aa+a+++a++ + GSVIVT01017572001 7 RYRGVRQRH-WGSWVSEIRHP-----QlkTRIWLGTFETAEDAARAYDEAARLMC 55 69****9.******9.....445********************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.31E-32	6	63	No hit	No description
Gene3D	G3DSA:3.30.730.10	5.9E-34	7	64	IPR001471	AP2/ERF domain
SMART	SM00380	9.6E-41	7	70	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.54E-21	7	65	IPR016177	DNA-binding domain
Pfam	PF00847	2.5E-12	7	56	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.837	7	64	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.1E-11	8	19	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.1E-11	30	46	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MAGQQQRYRG VRQRHWGSWV SEIRHPQLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR 60 TNFTYNSDDS QSSSSKLLSA TLTAKLQRCY MASPQGAKIP LATDFQQPHY SPNFGTEFKV 120 LEDDHIEQMI EELLHSGSIE LGFV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-16	4	63	2	62	ATERF1
3gcc_A	2e-16	4	63	2	62	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.30256	1e-133	bud

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM424440	1e-145	AM424440.2 Vitis vinifera contig VV78X250797.21, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002274284.1	4e-99	PREDICTED: ethylene-responsive transcription factor ERF003
Swissprot	Q94AW5	1e-62	ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBL	A0A438CHH6	9e-98	A0A438CHH6_VITVI; Ethylene-responsive transcription factor ERF003
TrEMBL	A0A438I4A5	8e-98	A0A438I4A5_VITVI; Ethylene-responsive transcription factor ERF003
TrEMBL	A5AEC6	9e-98	A5AEC6_VITVI; Uncharacterized protein
STRING	VIT_09s0002g09140.t01	1e-98	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25190.1	3e-33	ERF family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01017572001
Entrez Gene	100255943

Publications ? help Back to Top
Velasco R, et al. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS ONE, 2007. 2(12): p. e1326 [PMID:18094749] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]