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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01017368001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
FAR1 |
Protein Properties |
Length: 755aa MW: 86821.2 Da PI: 8.9271 |
Description |
FAR1 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01017368001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FAR1 | 69.4 | 8.4e-22 | 143 | 226 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH l
GSVIVT01017368001 143 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRVLEVTLEHNHLL 226
69*****************************************9988.....99*********************************87 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 755 aa
Download sequence Send
to blast |
MKICIRAYIK SRKTEDYLRI EPCHWTNSSQ SSNPKKSSGW PRASNIAPPP LSGPCSTSDS 60 DSGATVKSLV DGSSYLDPIF RITMEEISLS SEQVPSGEGN ETEKERDGEK TELVVQNGLT 120 QGRKEFVAPA VGMEFESYDD AYNYYNCYAK EVGFRVRVKN SWFKRNSREK YGAVLCCSSQ 180 GFKRIKDVNR LRKETRTGCP AMIRMRLVDS KRWRVLEVTL EHNHLLGAKI YKSMKKMGSG 240 TKRKLQSNSD AEVRTIKLYR ALVIDAGGNS SLNSNVKEIR KFSDHPNQLN LKKGDTQAIY 300 NYLCRMQLTN PNFFYLMDLN DEGCLRNVFW IDARSRAACG YFSDVIFFDN TYLSNKYEIP 360 LVALVGVNHH GQSVLLGCGL LAGETSESYV WLFKAWVTCM SGRTPQTIIT DRCKALQNAI 420 AEVFPRSHHR FGLSHIMKKV PEKLGGLRNY DAIRKALIKA VYESLKVIEF ESAWGFLIQR 480 FAVSDHEWLR SLFEDRARWA PVYLKDTHFA GMSSSQPGET LNPFFDRYVH KQTPLKEFLD 540 KYELALQKKH KEEALADIES RNSGPTLKTR CFFELQLSKV YTREIFKKFQ FEVEEMYSCF 600 STTQLHVDGP IIIFLVKERV LGEGNRREIR DFEVLYNRAA AEVRCICSCF NFYGYLCRHA 660 LCVLNFNGVE EIPSKYILSR WKKDYKRLYI PDHVSNNVDG TDRVQWFNQL YRSALQVVEE 720 GAISLDHYKI ALQAFDESLN RVHNVEEKPE QLKI*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help
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Source |
Description |
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM481798 | 0.0 | AM481798.2 Vitis vinifera contig VV78X220380.3, whole genome shotgun sequence. |
Orthologous Group
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP30 | 12 | 351 |