PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01017368001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

FAR1

Protein Properties

Length: 755aa MW: 86821.2 Da PI: 8.9271

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01017368001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.4	8.4e-22	143	226	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH l GSVIVT01017368001 143 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRVLEVTLEHNHLL 226 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-19	143	226	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.0E-34	345	439	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.631	632	668	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	643	670	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	5.7E-4	644	664	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence Send to blast
MKICIRAYIK SRKTEDYLRI EPCHWTNSSQ SSNPKKSSGW PRASNIAPPP LSGPCSTSDS 60 DSGATVKSLV DGSSYLDPIF RITMEEISLS SEQVPSGEGN ETEKERDGEK TELVVQNGLT 120 QGRKEFVAPA VGMEFESYDD AYNYYNCYAK EVGFRVRVKN SWFKRNSREK YGAVLCCSSQ 180 GFKRIKDVNR LRKETRTGCP AMIRMRLVDS KRWRVLEVTL EHNHLLGAKI YKSMKKMGSG 240 TKRKLQSNSD AEVRTIKLYR ALVIDAGGNS SLNSNVKEIR KFSDHPNQLN LKKGDTQAIY 300 NYLCRMQLTN PNFFYLMDLN DEGCLRNVFW IDARSRAACG YFSDVIFFDN TYLSNKYEIP 360 LVALVGVNHH GQSVLLGCGL LAGETSESYV WLFKAWVTCM SGRTPQTIIT DRCKALQNAI 420 AEVFPRSHHR FGLSHIMKKV PEKLGGLRNY DAIRKALIKA VYESLKVIEF ESAWGFLIQR 480 FAVSDHEWLR SLFEDRARWA PVYLKDTHFA GMSSSQPGET LNPFFDRYVH KQTPLKEFLD 540 KYELALQKKH KEEALADIES RNSGPTLKTR CFFELQLSKV YTREIFKKFQ FEVEEMYSCF 600 STTQLHVDGP IIIFLVKERV LGEGNRREIR DFEVLYNRAA AEVRCICSCF NFYGYLCRHA 660 LCVLNFNGVE EIPSKYILSR WKKDYKRLYI PDHVSNNVDG TDRVQWFNQL YRSALQVVEE 720 GAISLDHYKI ALQAFDESLN RVHNVEEKPE QLKI*

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence Send to blast

MKICIRAYIK SRKTEDYLRI EPCHWTNSSQ SSNPKKSSGW PRASNIAPPP LSGPCSTSDS  60
DSGATVKSLV DGSSYLDPIF RITMEEISLS SEQVPSGEGN ETEKERDGEK TELVVQNGLT  120
QGRKEFVAPA VGMEFESYDD AYNYYNCYAK EVGFRVRVKN SWFKRNSREK YGAVLCCSSQ  180
GFKRIKDVNR LRKETRTGCP AMIRMRLVDS KRWRVLEVTL EHNHLLGAKI YKSMKKMGSG  240
TKRKLQSNSD AEVRTIKLYR ALVIDAGGNS SLNSNVKEIR KFSDHPNQLN LKKGDTQAIY  300
NYLCRMQLTN PNFFYLMDLN DEGCLRNVFW IDARSRAACG YFSDVIFFDN TYLSNKYEIP  360
LVALVGVNHH GQSVLLGCGL LAGETSESYV WLFKAWVTCM SGRTPQTIIT DRCKALQNAI  420
AEVFPRSHHR FGLSHIMKKV PEKLGGLRNY DAIRKALIKA VYESLKVIEF ESAWGFLIQR  480
FAVSDHEWLR SLFEDRARWA PVYLKDTHFA GMSSSQPGET LNPFFDRYVH KQTPLKEFLD  540
KYELALQKKH KEEALADIES RNSGPTLKTR CFFELQLSKV YTREIFKKFQ FEVEEMYSCF  600
STTQLHVDGP IIIFLVKERV LGEGNRREIR DFEVLYNRAA AEVRCICSCF NFYGYLCRHA  660
LCVLNFNGVE EIPSKYILSR WKKDYKRLYI PDHVSNNVDG TDRVQWFNQL YRSALQVVEE  720
GAISLDHYKI ALQAFDESLN RVHNVEEKPE QLKI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.3791	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM481798	0.0	AM481798.2 Vitis vinifera contig VV78X220380.3, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002263979.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_019077918.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_019077919.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_019077920.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_019077921.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	F6HXG3	0.0	F6HXG3_VITVI; Uncharacterized protein
STRING	VIT_09s0002g07400.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	GSVIVT01017368001

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]