PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01017011001 | ||||||||
Common Name | LOC100254963, VIT_09s0002g03750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GATA | ||||||||
Protein Properties | Length: 284aa MW: 31181.8 Da PI: 7.5657 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.4 | 3.5e-17 | 179 | 213 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG+++++ +l GSVIVT01017011001 179 CLHCAAEKTPQWRTGPMGPKTLCNACGVRFKSGRL 213 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 4.1E-77 | 2 | 265 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 6.6E-16 | 173 | 223 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.004 | 173 | 209 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.4E-14 | 174 | 210 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.66E-14 | 175 | 237 | No hit | No description |
CDD | cd00202 | 4.96E-12 | 178 | 225 | No hit | No description |
Pfam | PF00320 | 7.1E-15 | 179 | 213 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 179 | 204 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MTDGFFDTVT GNSTDSSTVT VVDSCNSSLS GNEPHFSGDV GCRNFTDAQF SGELCVPCDE 60 LAELEWLSNF VEESFSSEDL HKIQVLSGIK APLHTTESPE PQFQPETARS EPILQPPMNV 120 PGKARSKRPR SVPCDWSTRL LVLSPATSSS ESDAFKKPPK TTSSKKKENS DSAGDGRKCL 180 HCAAEKTPQW RTGPMGPKTL CNACGVRFKS GRLVPEYRPA SSPTFVSAKH SNSHRKVLEL 240 RRQKDLQRSH HHQFLGQTSI FSATNGDDYL IHHHAGPDFR HMI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.23728 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00048 | PBM | Transfer from AT4G32890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM481323 | 0.0 | AM481323.2 Vitis vinifera contig VV78X039924.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002284028.1 | 0.0 | PREDICTED: GATA transcription factor 9 | ||||
Swissprot | O82632 | 3e-79 | GATA9_ARATH; GATA transcription factor 9 | ||||
TrEMBL | F6HYB5 | 0.0 | F6HYB5_VITVI; GATA transcription factor | ||||
STRING | VIT_09s0002g03750.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 6e-79 | GATA transcription factor 12 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01017011001 |
Entrez Gene | 100254963 |
Publications ? help Back to Top | |||
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