PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01016887001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | Dof | ||||||||
Protein Properties | Length: 240aa MW: 27450.6 Da PI: 8.4491 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.6 | 3.7e-40 | 16 | 76 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+stntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+s GSVIVT01016887001 16 EQEHLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRS 76 57899****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-28 | 6 | 72 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-33 | 18 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.432 | 20 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 22 | 58 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MQDPSTFQPM KTHFPEQEHL KCPRCESTNT KFCYYNNYNL SQPRHFCKNC RRYWTKGGAL 60 RNIPVGGGSR KNTKRSSNPK RPSSSSSTTE ECSTSAEVSA LSWPRTANSE ACWRILEIQS 120 RYSSSSMFPH CLKRARQGST SPSFWILFFI IAMLFFHLFG CQDSHTCLEF IFDLFLCSQM 180 VHPCNLWMDL CMGYTQSIVK IIELVFHVHV GTFACCFFRV VEGIAIFHGV DHIPMVFGC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.10620 | 1e-127 | leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00199 | DAP | Transfer from AT1G51700 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM476036 | 0.0 | AM476036.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X057671.24, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010267036.1 | 1e-56 | PREDICTED: dof zinc finger protein DOF3.1-like | ||||
TrEMBL | A0A1U8ALW5 | 2e-55 | A0A1U8ALW5_NELNU; dof zinc finger protein DOF3.1-like | ||||
STRING | XP_010267036.1 | 4e-56 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 2e-37 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01016887001 |