PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016867001
Common NameVIT_09s0002g02300, VITISV_006257
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 250aa    MW: 28295 Da    PI: 10.1066
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016867001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.9e-067799123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  GSVIVT01016867001 77 FVCEICNKGFQRDQNLQLHRRGH 99
                       89*******************88 PP
2zf-C2H2140.00015153175123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H +t+
  GSVIVT01016867001 153 WKCDKCSKRYAVQSDWKAHSKTC 175
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.8E-67699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.33E-77699No hitNo description
PfamPF121713.3E-57799IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9497799IPR007087Zinc finger, C2H2
SMARTSM003550.0177799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM00355240118148IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.8E-5141174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.33E-7148173No hitNo description
SMARTSM00355140153173IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSNLTSASGE ASVSSGNRAE TAPMYPQQQY FAPPNQAQAQ VQAQPSVKKK RNLPGNPDPD  60
AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEVRKKVYVC  120
PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HSKTCGTREY  180
RCDCGTLFSR RDSFITHRAF CDALAEESAR AITGNPMSLQ QQQQFNSNHD FHAFQMKKEQ  240
QNNPRFGSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36149210364Zinc finger protein JACKDAW
5b3h_F2e-36149210364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103115KLKQRTSKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.114750.0leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4651830.0AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019077826.11e-164PREDICTED: protein indeterminate-domain 11
SwissprotQ8H1F51e-120IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA5BN051e-163A5BN05_VITVI; Uncharacterized protein
STRINGVIT_09s0002g02300.t011e-164(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-120indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]