PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016800001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 323aa    MW: 36270.2 Da    PI: 7.4185
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016800001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg W++eEde+l++++  +G g+W++++r  g+ R++k+c++rw +yl
  GSVIVT01016800001 14 RGLWSPEEDEKLINYISSYGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61
                       788*******************************************97 PP
2Myb_DNA-binding49.41e-1567109145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        rg+++++E  l++++++ lG++ W+ Ia++++ gRt++++k++w+
  GSVIVT01016800001  67 RGSFSPQEAALIIELHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                        899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-26664IPR009057Homeodomain-like
PROSITE profilePS5129418.819961IPR017930Myb domain
SuperFamilySSF466892.1E-2911108IPR009057Homeodomain-like
SMARTSM007171.8E-131363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
CDDcd001673.54E-121761No hitNo description
PROSITE profilePS5129425.38462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2565117IPR009057Homeodomain-like
SMARTSM007177.7E-1666114IPR001005SANT/Myb domain
PfamPF002491.6E-1467110IPR001005SANT/Myb domain
CDDcd001678.67E-1269109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIS SYGHGCWSSV PRLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHRILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLVSHG  120
VPDLATFPDI PNPNASPEAF FSLNGNPNLI PSPQDHQLYL PSPTSMLQSG FDLANYNLEF  180
VHFQPPPAPP LPDPSSYDPT WPWGCHPHLN QEDYVLGNEV GPIYIETKPI NPNFSLPSFN  240
SPSMAPMMPK LSETISGNDR ILPSSSFPHE VVDPVARLPS LPSGSHPHAP HRAWYWPNCS  300
SIINVFDEGA YLYSFDRMHL LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-31141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4765810.0AM476581.2 Vitis vinifera contig VV78X241396.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274626.10.0PREDICTED: myb-related protein 305
TrEMBLF6HXY90.0F6HXY9_VITVI; Uncharacterized protein
STRINGVIT_09s0002g01670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.24e-80myb domain protein 26