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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01016768001 |
Common Name | VIT_09s0002g01410 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
MYB |
Protein Properties |
Length: 297aa MW: 33654.5 Da PI: 8.3847 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01016768001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 54.5 | 2.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+W+ +Ede l+++++ +G g+Wk+ a++ g++R++k+c++rw++yl
GSVIVT01016768001 14 RGAWSMQEDEVLINYIRVHGEGNWKSLAQKSGLKRCGKSCRLRWLNYL 61
89********************************************97 PP
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2 | Myb_DNA-binding | 55.9 | 9.7e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++++E+el+++++++lG++ W++Ia +++ gRt++++k++w++
GSVIVT01016768001 67 RGSFSPDEEELIIKLHRLLGNR-WALIAGRLP-GRTDNEIKNYWNTT 111
899*******************.*********.************87 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MGRSPSFADV GLIRGAWSMQ EDEVLINYIR VHGEGNWKSL AQKSGLKRCG KSCRLRWLNY 60 LRPGLKRGSF SPDEEELIIK LHRLLGNRWA LIAGRLPGRT DNEIKNYWNT TLCKRLRGDQ 120 KIEKKPVDNS ATLDSPQPIR TKAFRCQRVI ISTHKEESHL MNKDSDFISE TGHLPSTSTS 180 TLLHDSSINF LIDSYDVPAA LDPYFLQIPS YKMQENAISS SFSDCYLSED ELLVQNRISY 240 EPPQLTWALE LKKNFCLSVG ASFRVLLPLH CPVVSTNFQE YAEKGSLREL VCAAMI*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM451818 | 0.0 | AM451818.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X087069.17, clone ENTAV 115. |
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |