PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016764001
Common NameVIT_09s0002g01370
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 543aa    MW: 59887.8 Da    PI: 6.8512
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016764001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-15213272155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  GSVIVT01016764001 213 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 272
                        78*******************655454478446*************************98 PP
2AP248.22.7e-15315366155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSVIVT01016764001 315 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 366
                        78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-17213282IPR016177DNA-binding domain
CDDcd000188.48E-22213282No hitNo description
PfamPF008474.9E-12213272IPR001471AP2/ERF domain
PROSITE profilePS5103219.177214280IPR001471AP2/ERF domain
SMARTSM003806.7E-30214286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-16214281IPR001471AP2/ERF domain
PRINTSPR003673.1E-6215226IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-17315376IPR016177DNA-binding domain
CDDcd000186.85E-24315376No hitNo description
PfamPF008475.4E-10315366IPR001471AP2/ERF domain
SMARTSM003807.2E-33316380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-18316374IPR001471AP2/ERF domain
PROSITE profilePS5103218.848316374IPR001471AP2/ERF domain
PRINTSPR003673.1E-6356376IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIDEGFG RDEQHQQQGG FVMPLRSDGS LCVIDPFRRP SGSEDWRYEN  60
DMGGTDPSGE APKLEDFLGC CYSNSSDDRV NVNAPPSFNS NGELEADPPP QIQPYHHHYN  120
ETPQTLVTTT QIQQQCGSNP SGHNNCFYHV PFDHSATSVS GFKSWLRQTP FSGEKSSSSA  180
SADQPNNCNF QSLSLTMKPV PRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCRKEG  240
QTRKGRQVYL GGYDKEEKAA RAYDLAALKY WGPTTHINFP LSSYEKELEE MKNMTRQEFV  300
ANLRRKSSGF SRGASVYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA  360
AIKFRGTGAV TNFDISRYDV KRICSSSTLI AGDLAKRSPK ESAPPALEDY NSCASSTSPQ  420
PLLAITNGEP SEELPDMVWS SNTEDHQQQQ NTSIIATDTA LVASTSRTSS SLHSPKCPGG  480
GSGGPGADQF GAGGADYPQA YFSLHGSKYE ASNAGGDHPG SDRLRNLGMV HHQVPMFALW  540
NE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4680350.0AM468035.1 Vitis vinifera contig VV78X155042.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654442.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-135AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLF6HXX60.0F6HXX6_VITVI; Uncharacterized protein
STRINGVIT_09s0002g01370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-126AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]