PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

AP2

Protein Properties

Length: 543aa MW: 59887.8 Da PI: 6.8512

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01016764001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.1	1.4e-15	213	272	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g GSVIVT01016764001 213 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 272 78*****************655454478446***********************98 PP
2	AP2	48.2	2.7e-15	315	366	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g GSVIVT01016764001 315 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 366 78**************988532...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	3.73E-17	213	282	IPR016177	DNA-binding domain
CDD	cd00018	8.48E-22	213	282	No hit	No description
Pfam	PF00847	4.9E-12	213	272	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.177	214	280	IPR001471	AP2/ERF domain
SMART	SM00380	6.7E-30	214	286	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.5E-16	214	281	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-6	215	226	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.37E-17	315	376	IPR016177	DNA-binding domain
CDD	cd00018	6.85E-24	315	376	No hit	No description
Pfam	PF00847	5.4E-10	315	366	IPR001471	AP2/ERF domain
SMART	SM00380	7.2E-33	316	380	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.6E-18	316	374	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.848	316	374	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-6	356	376	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MSNWLGFSLT PHLRIDEGFG RDEQHQQQGG FVMPLRSDGS LCVIDPFRRP SGSEDWRYEN 60 DMGGTDPSGE APKLEDFLGC CYSNSSDDRV NVNAPPSFNS NGELEADPPP QIQPYHHHYN 120 ETPQTLVTTT QIQQQCGSNP SGHNNCFYHV PFDHSATSVS GFKSWLRQTP FSGEKSSSSA 180 SADQPNNCNF QSLSLTMKPV PRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCRKEG 240 QTRKGRQVYL GGYDKEEKAA RAYDLAALKY WGPTTHINFP LSSYEKELEE MKNMTRQEFV 300 ANLRRKSSGF SRGASVYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA 360 AIKFRGTGAV TNFDISRYDV KRICSSSTLI AGDLAKRSPK ESAPPALEDY NSCASSTSPQ 420 PLLAITNGEP SEELPDMVWS SNTEDHQQQQ NTSIIATDTA LVASTSRTSS SLHSPKCPGG 480 GSGGPGADQF GAGGADYPQA YFSLHGSKYE ASNAGGDHPG SDRLRNLGMV HHQVPMFALW 540 NE*

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MSNWLGFSLT PHLRIDEGFG RDEQHQQQGG FVMPLRSDGS LCVIDPFRRP SGSEDWRYEN  60
DMGGTDPSGE APKLEDFLGC CYSNSSDDRV NVNAPPSFNS NGELEADPPP QIQPYHHHYN  120
ETPQTLVTTT QIQQQCGSNP SGHNNCFYHV PFDHSATSVS GFKSWLRQTP FSGEKSSSSA  180
SADQPNNCNF QSLSLTMKPV PRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCRKEG  240
QTRKGRQVYL GGYDKEEKAA RAYDLAALKY WGPTTHINFP LSSYEKELEE MKNMTRQEFV  300
ANLRRKSSGF SRGASVYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA  360
AIKFRGTGAV TNFDISRYDV KRICSSSTLI AGDLAKRSPK ESAPPALEDY NSCASSTSPQ  420
PLLAITNGEP SEELPDMVWS SNTEDHQQQQ NTSIIATDTA LVASTSRTSS SLHSPKCPGG  480
GSGGPGADQF GAGGADYPQA YFSLHGSKYE ASNAGGDHPG SDRLRNLGMV HHQVPMFALW  540
NE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269\|PubMed:15988559}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM468035	0.0	AM468035.1 Vitis vinifera contig VV78X155042.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010654442.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
Swissprot	Q1PFE1	1e-135	AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBL	F6HXX6	0.0	F6HXX6_VITVI; Uncharacterized protein
STRING	VIT_09s0002g01370.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP112	17	209

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-126	AP2 family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01016764001

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711]