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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01016762001 | ||||||||
Common Name | VIT_09s0002g01350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GRF | ||||||||
Protein Properties | Length: 364aa MW: 40956.4 Da PI: 8.4792 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.4 | 3.3e-25 | 75 | 118 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e GSVIVT01016762001 75 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 118 79***************************************997 PP | |||||||
2 | QLQ | 55 | 2.5e-19 | 9 | 40 | 1 | 32 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 s+FTa+Q+q+L++Q+l++Ky+++++P+P++L+ GSVIVT01016762001 9 SPFTASQWQELEHQALIFKYIVSGVPIPADLI 40 89****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.9E-9 | 9 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.018 | 10 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.1E-14 | 10 | 40 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 75 | 119 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-20 | 76 | 118 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MMMSARNRSP FTASQWQELE HQALIFKYIV SGVPIPADLI CTVKRSLDSS LSSRLFPHQP 60 IGWGCFQMGF GRKADPEPGR CRRTDGKKWR CSKEAYPDSK YCERHMHRGK NRSRKPVEVI 120 SATNPSPTIS SINSNPSSTT TNSYSLSPLS PLSSSMTSET SHPHHHSYHN TSLYPFLYPH 180 PSSSRPPGSC LSPQATSSYS THHLFLDSGS YSQADRDYRH HHGMREGVDE RAFFPEASGT 240 VRGLHDSYTP LTMSSSKGYS HFQYQSPADN PKQQQEQQEQ QHCFVLGTDF KSSRPIKVER 300 DGEAQKPLHH FFGEWPLKNR DSWLDLEEDP PTHASFSTTQ LSISIPMSSH KLLASDSRIQ 360 TDG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.30211 | 0.0 | bud |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM468035 | 0.0 | AM468035.1 Vitis vinifera contig VV78X155042.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010654438.1 | 0.0 | PREDICTED: growth-regulating factor 1 | ||||
Refseq | XP_010654439.1 | 0.0 | PREDICTED: growth-regulating factor 1 | ||||
Refseq | XP_010654440.1 | 0.0 | PREDICTED: growth-regulating factor 1 | ||||
TrEMBL | A0A438K706 | 0.0 | A0A438K706_VITVI; Growth-regulating factor 1 | ||||
STRING | VIT_09s0002g01350.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-54 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01016762001 |