PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01016753001 | ||||||||
Common Name | LOC100261706, VIT_09s0002g01190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GRAS | ||||||||
Protein Properties | Length: 505aa MW: 56037.4 Da PI: 4.9219 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 263.3 | 8.4e-81 | 121 | 495 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 ++lL cA+a+++g+l+++q+lL l+elas++gd+++Rla + ++AL+++l++ + ++ p + s+++ +l f+evsP++ f GSVIVT01016753001 121 EQLLNPCATAITAGNLSRVQHLLYVLHELASSTGDANHRLADHGLRALSHHLSS-----SVSVGPITFSSTEPRFFQRSLLKFYEVSPWFAF 207 689**************************************************9.....33344555554444555555556********** PP GRAS 94 shltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAee 171 + +aN Il+ ++g + +Hi+D+++s+G+QWp+Ll+aL+ R+ ++pp +R+T++++ + + + + rL +fA++ GSVIVT01016753001 208 PNNIANTSILQILNGVpsrsRNLHILDIGVSHGVQWPTLLEALSRRSgGPPPLVRLTVIAATSDNdqntetpfsIAPPGDNFSARLLSFAKS 299 *************9987777899************************55666*******99776677777777667778899********** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflea 260 +++++++n l + l++l+++ ++++p+E+l+V+ +++lh+l +++++er+e+Lk++++l+P+ v+++e+++d+ n ++F+++f++ GSVIVT01016753001 300 MNINLQINRLDNHPLQSLSPQLIDTSPDETLIVCAQFRLHHLN---HNTPDERTEFLKVLRKLEPEAVILSENNMDCsctNCGDFATGFSRR 388 *********9999*****************************8...77777889*******************9776447888********* PP GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351 +ey ++++ds++a + + r + Er++++ e+ ++++ g++ +e +ekW er++ +GF ++e+a + a++ll+k++ ++++rv GSVIVT01016753001 389 IEYLWKFLDSTSAAF----KGRESEERRVMEGEAARALTNPGEM----NEGKEKWCERMRGVGFAGEVFGEDAIDGARALLKKYDsNWEMRV 472 ***********7775....6677777777777899999999999....99***********************************9999*** PP GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374 ee++g++ l Wk+ p+ ++S Wr GSVIVT01016753001 473 EEKDGCVGLWWKGLPVSFCSLWR 495 **********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.244 | 94 | 474 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-78 | 121 | 495 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MTIEEPEPNP TSDHILDWLE DSVSFLPSFL DDPYGSGDIS SYQWWDQGQE LDQDFTSYTD 60 NSINCNSAAV AGAVTPCDPA SVDHLQLSDS SKKRKSPDDP APRATGNNCN NSNSKEGRWA 120 EQLLNPCATA ITAGNLSRVQ HLLYVLHELA SSTGDANHRL ADHGLRALSH HLSSSVSVGP 180 ITFSSTEPRF FQRSLLKFYE VSPWFAFPNN IANTSILQIL NGVPSRSRNL HILDIGVSHG 240 VQWPTLLEAL SRRSGGPPPL VRLTVIAATS DNDQNTETPF SIAPPGDNFS ARLLSFAKSM 300 NINLQINRLD NHPLQSLSPQ LIDTSPDETL IVCAQFRLHH LNHNTPDERT EFLKVLRKLE 360 PEAVILSENN MDCSCTNCGD FATGFSRRIE YLWKFLDSTS AAFKGRESEE RRVMEGEAAR 420 ALTNPGEMNE GKEKWCERMR GVGFAGEVFG EDAIDGARAL LKKYDSNWEM RVEEKDGCVG 480 LWWKGLPVSF CSLWRLEDTK PNNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 7e-40 | 114 | 495 | 81 | 473 | Protein SHORT-ROOT |
5b3h_B | 3e-40 | 114 | 495 | 27 | 419 | Protein SHORT-ROOT |
5b3h_E | 3e-40 | 114 | 495 | 27 | 419 | Protein SHORT-ROOT |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in epidermal and cortical root cells. {ECO:0000269|PubMed:15961669}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM442468 | 0.0 | AM442468.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X278993.9, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002273108.1 | 0.0 | PREDICTED: nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | F6HXW0 | 0.0 | F6HXW0_VITVI; Uncharacterized protein | ||||
STRING | VIT_09s0002g01190.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP4082 | 15 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-170 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01016753001 |
Entrez Gene | 100261706 |
Publications ? help Back to Top | |||
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