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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01016703001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
Trihelix |
Protein Properties |
Length: 319aa MW: 35427.3 Da PI: 9.73 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01016703001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 45.7 | 1.7e-14 | 66 | 153 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ + +Li+a e+ +l+rg+lk+++W++v++ + ++ ++ +qCk++++ ++k+yk +k+ + + s++p++++l+
GSVIVT01016703001 66 CWSEGATSVLIDAWGERYLELSRGNLKQKHWKDVADIVssreDYTKTAKTDIQCKNRIDTVKKKYKLEKAKIAAG--GGPSKWPFYQRLD 153
7*************************************843333344556679*****************99997..67778******98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009793 | Biological Process | embryo development ending in seed dormancy |
GO:0010029 | Biological Process | regulation of seed germination |
GO:0010431 | Biological Process | seed maturation |
GO:0048831 | Biological Process | regulation of shoot system development |
GO:0005730 | Cellular Component | nucleolus |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MEDDEEIQSH PSPDTGSPAS PRSNGRITVT VAAAPPPQNT LTLALPIQQA RTAGNGGGGG 60 GGREDCWSEG ATSVLIDAWG ERYLELSRGN LKQKHWKDVA DIVSSREDYT KTAKTDIQCK 120 NRIDTVKKKY KLEKAKIAAG GGPSKWPFYQ RLDHLIGPTA KIASASPATA TPLPLQNQLR 180 RRAPVDSDSS QSEPEASPDS TDSFPPETFE RKRPRMQREL NSNTPRNKNW SNSVRELTQA 240 ILKFGEAYEQ AETSKLQQVA DMERQRMKFA KELELQRMQF FMKTQLEISQ LNHGRRVGNN 300 SIHRNNNNNN NNNSDSSN*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM475307 | 0.0 | AM475307.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X222065.21, clone ENTAV 115. |
GenBank | FQ382492 | 0.0 | FQ382492.1 Vitis vinifera clone SS0ABG54YO09. |