PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016594001
Common NameVIT_13s0019g00540
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 252aa    MW: 28909.1 Da    PI: 9.4147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016594001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.41.6e-051471861155
                        HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +R +++ +++  L++l+ +      +K + a++L++A  YIk Lq
  GSVIVT01016594001 147 KRSQKLSDRITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 186
                        6899**************99.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.588136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-9147209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-4147190No hitNo description
Gene3DG3DSA:4.10.280.102.1E-6147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVDLVLKYWA QDTEGTSCFS CCVSGQRILS MEFGANWFAT FFSFLFFRTS LSSTIKRLSH  60
PCPAADYQTS MPRYDGISQI PQLEDAMQNA RKRPIEAVDD LVGRKIFEEW KSSKKKKKTV  120
SSEGQWHPQA NKEAMEIQRQ RLHVPVKRSQ KLSDRITALQ KLVSPYGKTD TASVLQEASL  180
YIKLLQGQIR NLFQILSTSY CRVTPLHQQK IGEKEQDLQS RGLCLVPIAF TQKLTREDQV  240
DHHQAMEQRE F*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4487412e-84AM448741.2 Vitis vinifera contig VV78X100869.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279297.21e-149PREDICTED: transcription factor bHLH123 isoform X2
RefseqXP_010658602.11e-148PREDICTED: transcription factor bHLH123 isoform X1
TrEMBLD7TLX50.0D7TLX5_VITVI; Uncharacterized protein
STRINGVIT_13s0019g00540.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1507223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.12e-21bHLH family protein