PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016524001
Common NameLOC100259786, VIT_13s0019g01670
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 682aa    MW: 75105.9 Da    PI: 8.4216
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016524001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-07569618147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  GSVIVT01016524001 569 RRPFSVSEVEALVHAVEELGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 618
                        678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.78E-8372464IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.019564623IPR017930Myb domain
SMARTSM007173.5E-7568621IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-10569619IPR009057Homeodomain-like
CDDcd116602.58E-16570620No hitNo description
SuperFamilySSF466891.7E-14570650IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MVLKKKQDYG FNGFHVSTIP RAPRSIRRRG SIKKPVEDSQ ICAIDLLATL AGKLLQESES  60
SSASSNVAAG KDRLNISKDG IKQELQDDDK PLKGECLDQG SCEGIVFVSK LASQDLSPKY  120
TVKQFPHAVH DAVLDCTSTV ASPDYLDKRG SPDCGETCGD LENGAEIRQD AEGEESGGLT  180
MANRCSSKDS VELCMKNPAQ INSDSNVKLS LNRDSIPNAS FPKHRNDVKI GIIDDDENSY  240
RCNQHGTKIK AFRSSPCIGD QRIRKLLTSR YWKVAPKLKD CELSNTDGGI KPVFRKRKFC  300
GTRKRYQRET TFKRRKLFER HMVVASDGGI SSESVTNSPE KNMNTEMGGS AAMLHGVSGL  360
SSSVISHQAS FNSGDSHVKF SIKSFRVPEL FIEVPETETI GALKRTVMEA VNSIFGGGLH  420
VGMFLQGKKV RDDYKTLRQT GISHNDNLDT LGFALEPSPI HPSPPLHTED PPFLLPSDTS  480
QLLTRSPDPP TFDSGFSDAT PDPSPLTNLG NQVEKIHDSV PSPTDILTDK TMPDSRALVA  540
VPAMSLEALA VVPMNMKTNR ADLVQRRTRR PFSVSEVEAL VHAVEELGTG RWRDVKLRAF  600
DNAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQEVLD RVLSAHAYWS EHQAKQHGKH  660
QVGTLRITGP LAERDGIGQD I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-555536761120Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295315KRKFCGTRKRYQRETTFKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.114200.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4723840.0AM472384.2 Vitis vinifera contig VV78X157260.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010658557.10.0PREDICTED: telomere repeat-binding protein 4 isoform X2
TrEMBLF6HNW90.0F6HNW9_VITVI; Uncharacterized protein
STRINGVIT_13s0019g01670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-127TRF-like 2