PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01016246001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 1551aa MW: 171588 Da PI: 6.9233 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.001 | 1270 | 1295 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C C +sF++k +L H r+ + GSVIVT01016246001 1270 HRCDleGCRMSFKTKAELLLHKRNrC 1295 789999****************9876 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00088 | 1353 | 1379 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg sF+ s++ rH r+ H GSVIVT01016246001 1353 YQCKveGCGLSFRFVSDFSRHRRKtgH 1379 99*********************9777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 1.5E-14 | 51 | 91 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 13.73 | 52 | 93 | IPR003349 | JmjN domain |
Pfam | PF02375 | 2.4E-14 | 53 | 86 | IPR003349 | JmjN domain |
SuperFamily | SSF51197 | 4.67E-27 | 244 | 421 | No hit | No description |
SMART | SM00558 | 8.2E-46 | 255 | 424 | IPR003347 | JmjC domain |
PROSITE profile | PS51184 | 34.426 | 258 | 424 | IPR003347 | JmjC domain |
Pfam | PF02373 | 1.5E-35 | 288 | 407 | IPR003347 | JmjC domain |
SMART | SM00355 | 13 | 1270 | 1292 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.72E-7 | 1281 | 1330 | No hit | No description |
SMART | SM00355 | 0.12 | 1293 | 1317 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.528 | 1293 | 1322 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.5E-5 | 1294 | 1317 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1295 | 1317 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.1E-10 | 1318 | 1345 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.002 | 1323 | 1347 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.011 | 1323 | 1352 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1325 | 1347 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.88E-9 | 1333 | 1375 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.1E-10 | 1346 | 1376 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.23 | 1353 | 1379 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.473 | 1353 | 1384 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1355 | 1379 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1551 aa Download sequence Send to blast |
MSRKCHVNQI PEAIPISAQL KSYGTENSNS KPCDVSHRRS VIPIWLKGLP LAPEFRPTDT 60 EFADPIAYIS KIEKEASAFG ICKVIPPLPK PSKRYVISNL NKSLSKCPEL GSDVNASTVC 120 SSAKMGSGDG DADGEARAVF TTRHQELGQN LKRTKGVVQP QAGVHKQVWQ SGEIYTLEQF 180 ESKSKAFARN LLGMIKEVSP LVVEAMFWKA ASEKPIYVEY ANDVPGSGFG EPEDETSRQK 240 NLNGSNEMEG TAGWKLSNSP WNLQVIARSP GSLTRFMPDD IPGVTSPMVY IGMLFSWFAW 300 HVEDHELHSL NFLHTGSPKT WYAVPGDYAF AFEEVIRSQA YGGNIDRLAA LTLLGEKTTL 360 LSPEVVVASG IPCCRLIQNP GEFVVTFPRA YHVGFSHGFN CGEAANFGTP QWLKIAKEAA 420 VRRAAMSYLP MLSHQQLLYL LTMSFVSRVP RSLIPGARSS RLKDRQKEER ELLVKQAFIE 480 DMLNENNLLS VLLGKGSTYR AVLWDPESLP SSTKEPQLST EITTVSTKPR ENISEVENKD 540 DSNQNDLFDK MSLYIENVND LYLDDDDLLC DFQVDSGTLA CVACGILGFP FMSVVQPSDR 600 ASMEFLHADH PLVEDRAGDT ETMKSYCPSA VHGTSKGPVS DETTKEEISS AILMTENLKC 660 RKDLKLIKDG KESSIDANSL SSESLQMPLI TNFEKGWNKS TELLRPRIFC LEHAVQIKEL 720 LQPKGGASML IICHSDYQKI KAHATTVAEE IGHPFNYNEI PLDTASQEDL NLINLAIDDE 780 EHVECGEDWT SKLGINLQYC VKIRKNSPSK QVPHALALGG LFTDTTSSSN FLSLKWQSRK 840 SRSKLKSNLP SHIKPYESNQ IKEVEVMEGK SVGSTIRKED KLIQYSRRIF KFKSGGAEGA 900 SRARGRPRKN LPKDVSATSC DIVKNISRTS NNSPNIEKEG GESAGLDFYA SFGKSEMLHE 960 VQVLEATEDL SKNAVPAQVI NPLVTATPVV KSVEARINNQ TLEDEACNSV TCDGSEMPLE 1020 INITEVTGEK NKILGAENDS TLPIISVPTV EKSGIQMDHQ IMEEVNMTNE PGNLTQYNSE 1080 GQHGIQGDGD VLMNEVSDCD NFTSSHGPVG EGFDAQIENV VIEESCTNGE IGECMILDKE 1140 ASEQGILIAD GSGDEEHILS NDAMTNQPPP PSTVESSEIP REICPVNPKS TKKAERKRKR 1200 EGGQKTEDKF YFDSFIRSPC EGLRPRAKKD GSTGADTNKP VVEKPMAKTR KPADTSGPHK 1260 DKKENTKGSH RCDLEGCRMS FKTKAELLLH KRNRCPHEGC GKKFSSHKYA MLHQRVHDDE 1320 RPLKCPWKGC SMSFKWAWAR TEHVRVHTGA RPYQCKVEGC GLSFRFVSDF SRHRRKTGHY 1380 VNNTPKRKQW QPPRHLLHQL QRPPHPQHCL RLAPSEIQSS PESESLTHPM FAPSTSSCTS 1440 SPSSSASPTF SPPLSPPFHP TSSTLLLSNP SPSSSLKIRI GRRRRGGRVR AVFPKLFDVL 1500 GEARVLYRGF VCQGLLQEER VWEDVVVCGG SSGGENGVWE SGVVRCNTSK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 6e-70 | 45 | 438 | 8 | 346 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 6e-70 | 45 | 438 | 8 | 346 | Arabidopsis JMJ13 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.28939 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in cotyledons and leaves. Detected in inflorescences, stems, roots and siliques but not in shoot apical meristems or root tips. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18713399}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM462622 | 0.0 | AM462622.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X056606.11, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010658392.1 | 0.0 | PREDICTED: probable lysine-specific demethylase ELF6 isoform X2 | ||||
Swissprot | Q6BDA0 | 0.0 | ELF6_ARATH; Probable lysine-specific demethylase ELF6 | ||||
TrEMBL | F6HNE9 | 0.0 | F6HNE9_VITVI; Uncharacterized protein | ||||
STRING | VIT_13s0019g04530.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP7506 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 0.0 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01016246001 |
Publications ? help Back to Top | |||
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