PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

AP2

Protein Properties

Length: 305aa MW: 34512 Da PI: 7.0094

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01016097001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.9	1.7e-15	44	102	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g GSVIVT01016097001 44 IFRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 102 69****************999955656446***********************98 PP
2	AP2	51.6	2.4e-16	145	196	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g GSVIVT01016097001 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 196 89**99******99966...3.6***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.05E-16	43	112	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.4E-16	44	112	IPR001471	AP2/ERF domain
Pfam	PF00847	1.6E-11	44	102	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.691	44	110	IPR001471	AP2/ERF domain
SMART	SM00380	3.7E-26	44	116	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-5	45	56	IPR001471	AP2/ERF domain
Pfam	PF00847	4.4E-12	145	196	IPR001471	AP2/ERF domain
CDD	cd00018	6.23E-24	145	206	No hit	No description
SuperFamily	SSF54171	7.85E-18	145	206	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	8.7E-18	146	205	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.334	146	204	IPR001471	AP2/ERF domain
SMART	SM00380	1.8E-24	146	210	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-5	186	206	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0010187	Biological Process	negative regulation of seed germination
GO:0040008	Biological Process	regulation of growth
GO:0045723	Biological Process	positive regulation of fatty acid biosynthetic process
GO:1901959	Biological Process	positive regulation of cutin biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0000981	Molecular Function	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MAKTSQKSQK TTGNSTNNNG GSVAKVKRTR KSVPRDSPPQ RSSIFRGVTR HRWTGRYEAH 60 LWDKNCWNES QNKKGRQVYL GAYDDEEAAA HAYDLAALKY WGQETILNFP LSAYQEELKE 120 MEGQSKEEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ 180 EEAATAYDMA AIEYRGLNAV TNFDLSRYIN SPAPNPNPSD HELGLSFLQQ QHGSDATELP 240 LSHARSDCPL TPPDQIEMPR SSFPDDIQTY FDCQETNSYG ESDDIIFGDL KYFSSPMFQC 300 ELDT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM444327	2e-93	AM444327.2 Vitis vinifera contig VV78X036856.13, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002272159.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
Swissprot	Q94AN4	1e-122	AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBL	F6HBY5	0.0	F6HBY5_VITVI; Uncharacterized protein
STRING	VIT_09s0018g01650.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP112	17	209

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-112	ARIA-interacting double AP2 domain protein

Link Out ? help Back to Top
Phytozome	GSVIVT01016097001
Entrez Gene	100260401

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]