PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01015880001

Common Name

VIT_03s0017g02160

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

C2H2

Protein Properties

Length: 367aa MW: 39236.7 Da PI: 7.6602

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01015880001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	35	58	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ s + H H GSVIVT01015880001 35 FKCHVCNKKLSTASGMAIHVLQvH 58 89***************9987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50808	10.173	6	65	IPR003656	Zinc finger, BED-type
SMART	SM00355	5.1	11	34	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.48E-5	11	60	No hit	No description
PROSITE pattern	PS00028	0	13	34	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.03	35	58	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	37	58	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MGKKKKRAAK VFCYYCEREF EDEKILVQHQ KAKHFKCHVC NKKLSTASGM AIHVLQVHKE 60 TVSKVPNANP GRESTEIEIF GMQGIPDDIL AAHYGEQDED NPSKLAKVEV PPTNVVGVMP 120 PGSVGMGFPP QSTFGAIPPI YNSAVAVPPG WPVPRPQPWF PQHPAVPVPP AAPLGLAQRP 180 LFPIQNVTPP LPSATLQPSF QTTPPGPLSS SPTPVSQPLF PVVGTASIPS QNSQVTAAAL 240 SAPITSSTPS ELNNPSYSSI NTSMVNGYHA PSIQGTLVSS HTYASGSNTS GPSIGPPPMI 300 ANKAPVIQPA SNEVYLVWDD EAMSMEERRM SLLKYQVHDE TSQMNSVDAA IDRRISEGRL 360 AGRMAF*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MGKKKKRAAK VFCYYCEREF EDEKILVQHQ KAKHFKCHVC NKKLSTASGM AIHVLQVHKE  60
TVSKVPNANP GRESTEIEIF GMQGIPDDIL AAHYGEQDED NPSKLAKVEV PPTNVVGVMP  120
PGSVGMGFPP QSTFGAIPPI YNSAVAVPPG WPVPRPQPWF PQHPAVPVPP AAPLGLAQRP  180
LFPIQNVTPP LPSATLQPSF QTTPPGPLSS SPTPVSQPLF PVVGTASIPS QNSQVTAAAL  240
SAPITSSTPS ELNNPSYSSI NTSMVNGYHA PSIQGTLVSS HTYASGSNTS GPSIGPPPMI  300
ANKAPVIQPA SNEVYLVWDD EAMSMEERRM SLLKYQVHDE TSQMNSVDAA IDRRISEGRL  360
AGRMAF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Barely detectable in 3-days-old seedling, and then increases. {ECO:0000269\|PubMed:17138694}.
Uniprot	TISSUE SPECIFICITY: Expressed in root, shoot apex, leaves, stem and flowers. Expressed in expanding leaves, in the vasculature of fully expanded leaves, in the inflorescence, throughout young floral primordia, in the carpels of older flowers and in fertilized ovules. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694}.

Functional Description ? help Back to Top
Source	Description
UniProt	Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694, ECO:0000269\|PubMed:19121105, ECO:0000269\|PubMed:21282526}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM457428	0.0	AM457428.2 Vitis vinifera contig VV78X129692.21, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019074683.1	0.0	PREDICTED: protein SUPPRESSOR OF FRI 4 isoform X3
Swissprot	Q9C5G0	1e-138	SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBL	D7TUG1	0.0	D7TUG1_VITVI; Uncharacterized protein
STRING	VIT_03s0017g02160.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4587	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30970.1	1e-116	C2H2 family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01015880001

Publications ? help Back to Top
Ding L,Kim SY,Michaels SD FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Plant Physiol., 2013. 163(1): p. 243-52 [PMID:23899645] Resentini F, et al. SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression. Plant Physiol., 2017. 173(1): p. 155-166 [PMID:27920160]