PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015874001
Common NameVIT_03s0017g02130
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 75aa    MW: 8945.61 Da    PI: 10.024
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015874001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-053558123
                       EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                       +kC+ C+k  s+  ++  Hi   H
  GSVIVT01015874001 35 FKCHVCNKKLSTAFSMAIHILQvH 58
                       89*****************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508089.219665IPR003656Zinc finger, BED-type
SuperFamilySSF576677.66E-51160No hitNo description
Gene3DG3DSA:3.30.160.607.3E-42758IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803758IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MGKKKKRAAK VFCYYYEREF EDEKILLQHQ KAKHFKCHVC NKKLSTAFSM AIHILQVHKE  60
TVSKYYCLSF AFFF*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Barely detectable in 3-days-old seedling, and then increases. {ECO:0000269|PubMed:17138694}.
UniprotTISSUE SPECIFICITY: Expressed in root, shoot apex, leaves, stem and flowers. Expressed in expanding leaves, in the vasculature of fully expanded leaves, in the inflorescence, throughout young floral primordia, in the carpels of older flowers and in fertilized ovules. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4761781e-82AM476178.2 Vitis vinifera contig VV78X251862.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648217.11e-36PREDICTED: protein SUPPRESSOR OF FRI 4 isoform X2
RefseqXP_019074682.11e-36PREDICTED: protein SUPPRESSOR OF FRI 4 isoform X1
RefseqXP_019074683.11e-36PREDICTED: protein SUPPRESSOR OF FRI 4 isoform X3
SwissprotQ9C5G09e-31SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLD7TUF72e-45D7TUF7_VITVI; Uncharacterized protein
STRINGVIT_03s0017g02130.t013e-46(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4587810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.14e-33C2H2 family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]
  2. Resentini F, et al.
    SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression.
    Plant Physiol., 2017. 173(1): p. 155-166
    [PMID:27920160]