PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015726001
Common NameVIT_03s0017g01020
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 591aa    MW: 65339.2 Da    PI: 4.5337
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015726001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012229252123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        ++C++C+++F  k+++ +H+ + H
  GSVIVT01015726001 229 FECHKCNMTFDEKDTYLQHLLSsH 252
                        89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.39696171IPR001739Methyl-CpG DNA binding
SuperFamilySSF541711.37E-6104152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.101.6E-4105149IPR001739Methyl-CpG DNA binding
PROSITE profilePS501578.85229257IPR007087Zinc finger, C2H2
SMARTSM003550.044229252IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231252IPR007087Zinc finger, C2H2
SMARTSM003550.21276298IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.891276303IPR007087Zinc finger, C2H2
PROSITE patternPS000280278298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MVVAGGGSEL GEIVEKGKRG RKKRIVAAGE GGGQRPLQIV NRNGEVVDLE ALASAEDPYG  60
DELKRRTVGL DREEEILGVL RGLDGQWCSR RKKRKIVDAS GFGDALPIGW KLLLGLKRRE  120
GRVSVYCRRY ISPSGEQFVS CKEAAAYLQS YFGLADTNQP MGQRDDNIQQ VNRISSESLA  180
GSTHKDDDLG EDIIPISVLP SSSISYEYEK EVALLGIENL AEVEVRDLFE CHKCNMTFDE  240
KDTYLQHLLS SHQRTTRRYR LGTSVGDGVI VKDGKYECQF CHKIFQERRR YNGHVGIHVR  300
NYVRNFEDMP GRPSVQKTVE SPSRDELPSR TSKMDALIEI AQSSIFETSA AAPSDEPNGV  360
CTFGNPDVIS TPEVPTADSE HEQNLGFCLG EPEMEDSITN RTLDEELDQQ EGDCVMADEN  420
TEKINGDSDA ACIKMDCCLD TTTTLSTNDK NGCSSESFDG KYGVSFSNNE VEKSGFEQRS  480
PETHLLTPSS NQTVFDVENN MNDISEQSKP GGVEEYENSG LTRGYGSSDI GRDNDVATMT  540
MSQTPEDNVY QNRVSDSSMP LVHPLHSFPT YNAISDKHFS DSSAQYLLLP *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.31390.0flower| fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4365250.0AM436525.2 Vitis vinifera contig VV78X179149.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019074654.10.0PREDICTED: uncharacterized protein LOC100260704 isoform X3
TrEMBLD7TU810.0D7TU81_VITVI; Uncharacterized protein
STRINGVIT_03s0017g01020.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP203579