PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01015204001 | ||||||||
Common Name | LOC100261004, VIT_11s0016g02210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GATA | ||||||||
Protein Properties | Length: 310aa MW: 34198.6 Da PI: 9.6104 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.3 | 2.5e-19 | 177 | 210 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk + GSVIVT01015204001 177 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 210 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 9.03E-13 | 170 | 211 | No hit | No description |
SMART | SM00401 | 4.2E-19 | 171 | 222 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.532 | 171 | 207 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.6E-15 | 175 | 210 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.95E-11 | 176 | 204 | No hit | No description |
Pfam | PF00320 | 4.9E-17 | 177 | 210 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 177 | 202 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MTPNYLNSPP PPPFPLQLNE DQHHQLLFSP KPQPSSSSSS SLTCPIFFSP TKEQGGCHYR 60 DLHQAQPQQE AHDKFVFRGG SYDHPTLESE SDNGLKLTIW KTEDRNENHS ENGSVKWMSS 120 KMRVMQKMMI SDQTGAQKPS NTALNFGDHK QQSLPSETDY NSINSSNINS NNTIRVCADC 180 NTTKTPLWRS GPRGPKSLCN ACGIRQRKAR RAMAAAAATA NGTILPTNTA PTKTKAKHKD 240 KKSSNGHVSH YKKRCKLAAA PSCETKKLCF EDFTISLSKN SAFHRVFLQD EIKEAAILLM 300 ALSCGLVHG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM464590 | 0.0 | AM464590.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X168410.7, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282173.1 | 0.0 | PREDICTED: GATA transcription factor 21 | ||||
TrEMBL | A0A438E8H7 | 0.0 | A0A438E8H7_VITVI; Putative GATA transcription factor 22 | ||||
TrEMBL | D7TB78 | 0.0 | D7TB78_VITVI; Uncharacterized protein | ||||
STRING | VIT_11s0016g02210.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 2e-20 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01015204001 |
Entrez Gene | 100261004 |