PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015197001
Common NameVIT_11s0016g02130
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 594aa    MW: 66167.2 Da    PI: 7.7643
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015197001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063073221126
                        GTS--TTTTT-SS-SS CS
            zf-CCCH  11 rtGtCkyGdrCkFaHg 26 
                         +G C++G++C+F H+
  GSVIVT01015197001 307 SSGSCPRGNKCNFLHD 322
                        57*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073804.00E-377219No hitNo description
PROSITE profilePS5010313.901296324IPR000571Zinc finger, CCCH-type
SMARTSM003560.002298323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-7300324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6300325IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-5300322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347328356IPR000571Zinc finger, CCCH-type
SMARTSM003560.034330355IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5330357IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4333357IPR000571Zinc finger, CCCH-type
PfamPF046777.7E-35373487IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541971.06E-5378456IPR011146HIT-like domain
PfamPF046766.9E-20502590IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MAPPRILLCG DVLGRLNQLV KRILSVNKSA GPFDAVLCVG QFFPDSPERL LEFMDYIEGR  60
SQIPLPTYFI GDYGIGAAKV LSAASKDSAN LGFKMDGLRI CDNLYWLKGS GKFTLHGLSV  120
VYISGRRSLD GQQFGKYSQD DVDALRALAD DGVTKGAVTS NIPPGISDSS GCDSAISELV  180
GEIKPRYHIA GTKGIFYDRE PYSNLDAVHV TRFLGLAPVG NKDKQKFIHA ISPIPASTMS  240
SAEISMKPPN TTLFPYKIIE ETAPTNQATK RPSDSISDTQ YWRYDVSQKR QKHGAGDGDK  300
LCFKFVSSGS CPRGNKCNFL HDTEAREQYM RGVCFDFINK GKCERGPDCN FKHSLQDEDE  360
GFASRRSGSE NAKSSRSKRC WFCLSSPDVE SHLIISIGES YYCALAKGPL VEDQVLVIPV  420
EHSANTLSLP PECEIELDRF QKSLKMYFRT QGKEVVFFEW IFKRGTHANI QAVPIPLSRA  480
SAVKNIFILA AEKLGFQFVT TKSNNDSEGR KSLRAQFDDK ISFFYVELPD GTILSHAIED  540
NEKFPVQFGR EVLAGLLNMA DRADWRNCKQ SKEDEMKMAE VFKNQFKKFD PYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U3e-15374590669887CWF19-like protein 2
6id1_U3e-15374590669887CWF19-like protein 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.16090.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4247220.0AM424722.2 Vitis vinifera contig VV78X067737.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279554.20.0PREDICTED: zinc finger CCCH domain-containing protein 64 isoform X2
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLD7TB710.0D7TB71_VITVI; Uncharacterized protein
STRINGVIT_11s0016g02130.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP534877