PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015184001
Common NameVIT_11s0016g02020
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 676aa    MW: 73633.5 Da    PI: 9.1856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015184001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-06259281225
                        -S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                        k ++C++far GtC  Gd C+F H
  GSVIVT01015184001 259 KSSPCCHFAR-GTCMKGDDCPFDH 281
                        6789******.************* PP
2zf-CCCH18.63.3e-06287307525
                        --SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                        +C+++   G+C++Gd C F+H
  GSVIVT01015184001 287 PCNNYVSKGFCSRGDDCLFSH 307
                        69999999************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.366228255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6228253IPR000571Zinc finger, CCCH-type
SMARTSM003560.013229254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742257284IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4257283IPR000571Zinc finger, CCCH-type
SMARTSM003560.032284309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5286313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.896287310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4287308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MELEKSVSPR TASSPFYVTV DGDIEEGEIS GDFMGDDLSI EDDVASEMKK GEEESISENI  60
INKEEFTCNE QKRVNDKDSE STSKIVSSVD KGDHGVEVTE SNRNQMRCKS QMGQGGRTIN  120
GAKKTDGSDC MREAETTKMK GSRAKVDFDN PANFLDDLVF HGESLADNAA ENLSITSVKE  180
GARVTKKRKR VLSKEKKVKK KQKERKKRAE KNKELGVKRL RLLPVSKPKT VTYCRHYLKG  240
RCHEGDHCRF SHDTIPLTKS SPCCHFARGT CMKGDDCPFD HQLSNYPCNN YVSKGFCSRG  300
DDCLFSHKMP LKESSPTAVN VCKPVSEPPS LPSKSYSKKL DMNGTSHQNG NSLSHSVGIF  360
PQSNMEKKVA EIVLKPPEQA SRGINSLSFG KSPMDYSGKL KQIGSSPTMD EGVEVDKQKN  420
QGEVQNMNEK AKRTPVTVPP RGINFLSFGK APLNDSSVKE LAGSPSNRED GNKILPLGDS  480
NKYKQVGSSS ARDGNINVSS QLNQSATETI HKLNEMSNGR QPAAAPPGIN FLSFGKAPLD  540
DLSSKRQSKS PSQSNNVIEI PIQERQRASS GFQNSSAVPW GLPASPITSV SDQLVHGHNK  600
DTSSSAQKAL LSTLAFAAKY ESALKIDRSI VAPSVSMEAN KEIRNVSNSG GSQNKSMNAS  660
TILDFLFSSG GKTKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187207RKRVLSKEKKVKKKQKERKKR
2195207KKVKKKQKERKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.167280.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4645360.0AM464536.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X011061.22, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656180.10.0PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X2
RefseqXP_019078732.10.0PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X2
TrEMBLD7TB600.0D7TB60_VITVI; Uncharacterized protein
STRINGVIT_11s0016g02020.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP81611212