PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015170001
Common NameLOC100254369, VIT_11s0016g01890
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 282aa    MW: 31041.8 Da    PI: 9.2883
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015170001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-12555146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                       +++WT eE+e l  +v+++G+g Wk I +         +R+  ++k++w++
  GSVIVT01015170001  5 KQKWTSEEEEALRAGVAKHGTGKWKNIQKDPEfnhflFTRSNIDLKDKWRN 55
                       79**********************************999**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.591161IPR017930Myb domain
SuperFamilySSF466891.59E-16258IPR009057Homeodomain-like
SMARTSM007171.2E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-15456IPR009057Homeodomain-like
PfamPF002491.1E-9555IPR001005SANT/Myb domain
CDDcd116604.41E-21656No hitNo description
SuperFamilySSF467851.03E-16116199IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.6E-19117182IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.3E-14118187IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.942119187IPR005818Linker histone H1/H5, domain H15
PfamPF005389.0E-11121180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGTGKWKN IQKDPEFNHF LFTRSNIDLK DKWRNMSVSA  60
SGQGPREKSR TPKTKANTDA PSAATVSNPQ NSSSAAPVTG DASADAMDDA SKNILDGKSA  120
PRYNAMIFEA LSALKEPNGS DTSTIVSFIE QRHEVPQNFR RLLSSRLRRL VAQDKLEKVQ  180
NCYKIKRDPS FGTKTPTPKQ KDIRPRQSQS TDYVASIETV EEAAVAAAYK VAEAENKSFV  240
AAEAVKEAER VAKMAEESEA MLQFTLEILE KCSRGEVVYI A*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3808970.0FQ380897.1 Vitis vinifera clone SS0ACG20YE16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281183.10.0PREDICTED: telomere repeat-binding factor 4 isoform X2
SwissprotF4IEY43e-79TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLD7TCM40.0D7TCM4_VITVI; Uncharacterized protein
STRINGVIT_11s0016g01890.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.15e-58MYB_related family protein
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]