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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | GSVIVT01015120001 | ||||||||
| Common Name | VIT_11s0016g01480 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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| Family | NF-YA | ||||||||
| Protein Properties | Length: 311aa MW: 33934.8 Da PI: 8.7035 | ||||||||
| Description | NF-YA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | CBFB_NFYA | 103.1 | 2.5e-32 | 169 | 225 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
d p++VNaKQy++Il+RRq+Rak+e+++kl k+rkpylheSRh hAl+R RgsgGrF
GSVIVT01015120001 169 DGPIFVNAKQYHGILRRRQSRAKMEAQNKL-VKARKPYLHESRHLHALNRVRGSGGRF 225
57****************************.**************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00521 | 1.8E-36 | 167 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
| PROSITE profile | PS51152 | 36.805 | 168 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
| PRINTS | PR00616 | 2.7E-23 | 171 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
| Pfam | PF02045 | 4.7E-27 | 171 | 225 | IPR001289 | Nuclear transcription factor Y subunit A |
| PRINTS | PR00616 | 2.7E-23 | 202 | 225 | IPR001289 | Nuclear transcription factor Y subunit A |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0016021 | Cellular Component | integral component of membrane | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 311 aa Download sequence Send to blast |
MPHFTVNCQA WWNSNEQQLP ESFSKNLSLK VESPPQLYQN MKQLGLQLQD QDSSSSQSTG 60 QSHQEVSAIG RTNSQDQCIS SESVHGESCE KRVEGQSQMK PVFFMANPDV VFNPSQVDYG 120 HSVTHVAYPY ADPYHGGLVA AYGPHAVIQP QLVGIAPTRV PLPFDIAEDG PIFVNAKQYH 180 GILRRRQSRA KMEAQNKLVK ARKPYLHESR HLHALNRVRG SGGRFLSTKK LQEPDSTSNA 240 GCHSSDTGKF VASTTSSSDV TSVSNSDVLF RQPEHRFSGM SPHMGGAMQG GGGGTYGQWS 300 PAPGCPVRSR * |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4awl_A | 2e-19 | 171 | 251 | 4 | 76 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | FQ382079 | 0.0 | FQ382079.1 Vitis vinifera clone SS0ABG72YO12. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002278441.2 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 | ||||
| Refseq | XP_010656137.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 | ||||
| Refseq | XP_010656139.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 | ||||
| Refseq | XP_010656140.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 | ||||
| Refseq | XP_010656142.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 | ||||
| Refseq | XP_010656144.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 | ||||
| Refseq | XP_010656145.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 | ||||
| Swissprot | Q93ZH2 | 5e-59 | NFYA3_ARATH; Nuclear transcription factor Y subunit A-3 | ||||
| TrEMBL | A0A438E8D0 | 0.0 | A0A438E8D0_VITVI; Nuclear transcription factor Y subunit A-3 | ||||
| STRING | VIT_11s0016g01480.t01 | 1e-173 | (Vitis vinifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP680 | 16 | 72 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G72830.1 | 2e-48 | nuclear factor Y, subunit A3 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | GSVIVT01015120001 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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