PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015006001
Common NameLOC100257707, VIT_11s0016g00380
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 390aa    MW: 41353.4 Da    PI: 6.6269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015006001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87e-12160205555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h+++Er RR++i +++ +L+el+P++      K +Ka++L + +eY+k Lq
  GSVIVT01015006001 160 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIEYVKFLQ 205
                        99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.40E-12153209No hitNo description
SuperFamilySSF474594.97E-17153216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.161155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-17157215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9160205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSRSSRPFTE LDHVGCNGNE PSDFQRSVGN FQALPPIPQL WSQPSYGGGS SLSPVMGEYK  60
MQGFGLQGEY VDNEMDIMRN RYVGDEILQL DNISSAIPIK GKEEQHTHPF SPSAVGPHMT  120
MTASGLQSLP QTTVGTASGG CNGTGKPRVR ARRGQATDPH SIAERLRREK IAERMKNLQE  180
LVPNSNKTDK ASMLDEIIEY VKFLQLQVKV LSMSRLGAAE AVVPLITDGQ AEGSKGLSLS  240
PSAGQAEDIC QSPDQIAFEQ EVVKLMESNV TMAMQYLQSK GLCLMPIALA TAISSGKAAS  300
SGTGSDEGKN GLIGGFIPNN NSSSNTSSSN TSSNSLPGIG THHTSSDGNV LIGKLSREGI  360
TTSSCNGAIN KQEELKSTSC TARELKAKT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes of the root maturation zone. Detected constitutively in flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:16581911}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4717970.0AM471797.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X221977.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277344.20.0PREDICTED: uncharacterized protein LOC100257707 isoform X2
SwissprotQ9LSQ31e-59BH082_ARATH; Transcription factor bHLH82
TrEMBLF6HGZ70.0F6HGZ7_VITVI; Uncharacterized protein
STRINGVIT_11s0016g00380.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.15e-57LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]