PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01014739001 | ||||||||
Common Name | LOC100249773, VIT_19s0015g01020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | bZIP | ||||||||
Protein Properties | Length: 252aa MW: 27650.4 Da PI: 10.6338 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.8 | 3.6e-11 | 182 | 236 | 5 | 59 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 k rr++kNRe+A rsR+RK+a+ ++ + ++++L++eN+ L+ + l ++k GSVIVT01014739001 182 KIRRRMIKNRESAARSRARKLAYDAQQQIEIAKLKKENEFLRRIIRVLLTVIKKK 236 6789**************************************8887765555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.2E-9 | 178 | 242 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.6E-10 | 179 | 239 | No hit | No description |
PROSITE profile | PS50217 | 9.427 | 180 | 243 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 6.7E-10 | 181 | 227 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.1E-6 | 182 | 233 | No hit | No description |
CDD | cd14707 | 9.26E-19 | 182 | 236 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 185 | 200 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MFPVFPNSNE GKSVQLSPLS LGAHLQGAQQ FQTPSSLVSD MIQPANFVLS GNWENAQESL 60 QNWMRMKSLR NKEKTLLSIG NGSGSSQFPI HRAGNVLEPM GSAGFGVGHG GAGDGHQKEL 120 PHQVINGFSM VNPYEVNAEK QAVQGAHPYH QFINMFSPGN GSTETVINTA DADATETAAA 180 EKIRRRMIKN RESAARSRAR KLAYDAQQQI EIAKLKKENE FLRRIIRVLL TVIKKKRAQV 240 TKLSRTFSEP P* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.7901 | 0.0 | fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM474565 | 0.0 | AM474565.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X121828.13, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272719.1 | 0.0 | PREDICTED: G-box-binding factor 4 | ||||
Refseq | XP_010644623.1 | 0.0 | PREDICTED: G-box-binding factor 4 | ||||
Refseq | XP_019072698.1 | 0.0 | PREDICTED: G-box-binding factor 4 | ||||
TrEMBL | D7UAM2 | 0.0 | D7UAM2_VITVI; Uncharacterized protein | ||||
STRING | VIT_19s0015g01020.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP19395 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G45249.1 | 3e-11 | abscisic acid responsive elements-binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01014739001 |
Entrez Gene | 100249773 |