PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01014576001
Common NameLOC100260605, VIT_19s0014g05000
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 393aa    MW: 43320.8 Da    PI: 9.4045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01014576001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05159181223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C++Cg+ Fs ++  ++H  + H
  GSVIVT01014576001 159 TCHKCGEQFSKWEAVETHHLSkH 181
                        7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280160181IPR007087Zinc finger, C2H2
SuperFamilySSF563991.37E-21183391No hitNo description
Gene3DG3DSA:3.90.228.103.9E-8190368IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MPTVWLSLRR SLHCKSEPSD VHDPKARRQL STILTKKPCR SGCSRSIANL KDVIHGSKRH  60
MEKPPSCSPR SIGSSEFLNP ITHEVILSNS RCELKITGHP TMHYFKSPST PPRKSPFLLS  120
DREGSGFGGS TIFGGGSGAI HSNNRASLDT DSNGTSAVTC HKCGEQFSKW EAVETHHLSK  180
HAVTELVEGD SSRKIVEIIC RTSWLKSENH CGRIERVLKV HNMQKTLGRF EEYREMVKTK  240
ASKLPKKHPR CLADGNELLR FYGTTMTCAL GVNGSSNLCI SDKCCVCRII RHGFSAKKEL  300
KGGIGVFTTS TSGRAFESIE VYDEDPSIRK ALIVCRVIAG RVHRPLENIQ DMAGQSGFDS  360
LAGKVGLYSN IEELYLLNPR ALLPCFVVIC KP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.145380.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4840960.0AM484096.2 Vitis vinifera contig VV78X260584.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010644321.10.0PREDICTED: uncharacterized protein LOC100260605
TrEMBLF6H2J00.0F6H2J0_VITVI; Uncharacterized protein
STRINGVIT_19s0014g05000.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-180C2H2 family protein