PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01014454001
Common NameLOC100243528, VIT_19s0014g03820
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 342aa    MW: 37848.6 Da    PI: 7.2502
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01014454001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT eEd++l+d+++++G g+W+t ++  g++R++k+c++rw +yl
  GSVIVT01014454001 14 KGPWTVEEDQKLLDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYL 61
                       79********************************************97 PP
2Myb_DNA-binding51.13.1e-1667110146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w++
  GSVIVT01014454001  67 RGRFSFEEEEAIIQLHGILGNK-WSAIAARLP-GRTDNEIKNYWNT 110
                        89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.222961IPR017930Myb domain
SuperFamilySSF466892.32E-3111108IPR009057Homeodomain-like
SMARTSM007179.3E-161363IPR001005SANT/Myb domain
PfamPF002491.4E-161461IPR001005SANT/Myb domain
CDDcd001675.00E-131661No hitNo description
PROSITE profilePS5129424.93162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2565116IPR009057Homeodomain-like
SMARTSM007171.8E-1566114IPR001005SANT/Myb domain
PfamPF002492.2E-1467110IPR001005SANT/Myb domain
CDDcd001678.41E-1269110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRTPCCDKN GMKKGPWTVE EDQKLLDYIQ KHGHGRWRTL PKNAGLKRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEEAIIQ LHGILGNKWS AIAARLPGRT DNEIKNYWNT RIRKKLLRMG  120
IDPVTHAPRM DLLELASLLG SSLYNSSLQL NVPAGSLGMG PMVNDDVLTL ATALLSSHFQ  180
NQFESFQGNN LQSSIQEVQA CPTSSAASTP FLNETQLMQA IAEHLSQNPT DFAYQNSLPN  240
LWQVHGGHPI TAASFTNPTL SFDSIPSSIT GHQTLKSNAV SNNTQNFSFD SVLSTPSSTS  300
TPLDSSQMTY AKGSTEDERD SYCSNFLMFD IPSDLDVNAI M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-31141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-31141164105C-Myb DNA-Binding Domain
1msf_C1e-31141164105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4855400.0AM485540.2 Vitis vinifera contig VV78X111537.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281638.10.0PREDICTED: transcription factor MYB35
SwissprotQ9LDR81e-109MY102_ARATH; Transcription factor MYB102
TrEMBLF6H2F30.0F6H2F3_VITVI; Uncharacterized protein
STRINGVIT_19s0014g03820.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.16e-96MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]