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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSVIVT01013923001 |
| Common Name | LOC100261260, VIT_16s0013g01050 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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| Family |
ERF |
| Protein Properties |
Length: 278aa MW: 30915.3 Da PI: 5.5657 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01013923001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 56.6 | 6.2e-18 | 119 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+++AeIrdp + + r++lg+f ta e a+a+++a+ k++g
GSVIVT01013923001 119 HYRGVRRRP-WGKFAAEIRDP---NrRGSRVWLGTFETAIEGARAYDRAAFKMRG 169
7********.**********9...4334*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MAEEASSLHL IHQQLLFDFE SFEGFVSHVN VPSQTSTSDS SPSTSDIVPL SNFSNLHEDE 60
NNPFLLHCST SAPSGFFQFE TKSPKNSTLS HRRPPLSISV PQPTVSQSPA ESDSGDIRHY 120
RGVRRRPWGK FAAEIRDPNR RGSRVWLGTF ETAIEGARAY DRAAFKMRGS KAILNFPLEA 180
DNWSGSDPPA TSGQKRERDS ETEERQQVEM KVLKQEEHLP ESDCTLAAAS NVLGVCPLTP 240
SNWRAVWEEG DMEGMFHLPP LTPLSPHPWI AYSQLIV*
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Vvi.308 | 0.0 | flower| fruit| inflorescence| leaf| pedicel| root |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots. Not expressed in cell culture. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM425123 | 0.0 | AM425123.2 Vitis vinifera contig VV78X102658.4, whole genome shotgun sequence. |
| Orthologous Group
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| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP6 | 16 | 1718 |
