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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01013671001 | ||||||||
Common Name | LOC100249427, VIT_18s0001g01820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 573aa MW: 63327.9 Da PI: 4.4857 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.1 | 2.9e-52 | 21 | 147 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ppGfrFhPtdeelv +yLkkk+ +++l+l ++i+evd+yk++P+dLp +k+k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd++ GSVIVT01013671001 21 PPGFRFHPTDEELVLYYLKKKICRRRLKL-DIIAEVDVYKWDPEDLPglSKLKTGDRQWFFFSPRDRKYPNGARSNRATRHGYWKATGKDRT 111 8****************************.99***************6559999************************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + + vg+kktLvfykgrap+ e+tdWvmhey++ GSVIVT01013671001 112 ISC-NIRSVGVKKTLVFYKGRAPSKERTDWVMHEYTM 147 ***.9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-59 | 18 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.012 | 20 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MKVTVGDSSP CFDGDEKSAW PPGFRFHPTD EELVLYYLKK KICRRRLKLD IIAEVDVYKW 60 DPEDLPGLSK LKTGDRQWFF FSPRDRKYPN GARSNRATRH GYWKATGKDR TISCNIRSVG 120 VKKTLVFYKG RAPSKERTDW VMHEYTMDEE ELKRCPNVQD YYALYKVFKK SGPGPKNGEQ 180 YGAPFKEEEW ADEDDLDVSN YSVEETPPEQ LNGVISVNNS KPNGQDCQAD AWDDIWKGLA 240 EAPPVVPLRV DDYVNLLAQV IGEEEAQTPL VDSSLNGAFV ADPISTVLTP TSQQYAVPEN 300 VEFTQSASSQ LQLHEAPEVT SAPNISEQER GLSEEDFLEM DDLLGPEPIP QNYEKTEENL 360 QFEGDGLSIL DLYHDAAMFL RDIGPIDQGT VPHPYLNTIE NEMVNQLNYQ LQPHSVGADQ 420 ISGQLWTLDQ SVCTSAESIQ GIIGQPTSGV VYASSSTNVP TEGNQNMNGE GGNGAGNRFT 480 SALWSFVESI PTTPASASEN ALVNRALVRM SSFSRMRMNA LNTNAGNGGA ATWKGGINKG 540 GFIILSVIGA LIAIFWVLML GPVKMLGRCL PS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-48 | 13 | 147 | 8 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.22179 | 0.0 | bud| flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM444427 | 0.0 | AM444427.2 Vitis vinifera contig VV78X065537.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002265611.1 | 0.0 | PREDICTED: NAC domain-containing protein 17 | ||||
Swissprot | Q9XIC5 | 1e-156 | NAC17_ARATH; NAC domain-containing protein 17 | ||||
TrEMBL | D7TFR5 | 0.0 | D7TFR5_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g01820.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP9932 | 7 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-139 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01013671001 |
Entrez Gene | 100249427 |