PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013553001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 411aa    MW: 44206.6 Da    PI: 8.4063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013553001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.4e-11344389655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  GSVIVT01013553001 344 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 389
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005338388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14341403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-11342393No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13343401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-13344394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-8344389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MWTHTLSWTF PQSASPFLTH YSLSLFLPFL LSFSSFSSSF FFFFHIFLSH SKCLIFIMYP  60
SSASSSSHRS LHSSGLIRYG SAPGSLLTSA VDSLVSTDRE FSPLGSHHIM PHQYFSGDSS  120
SESTCKVAAP PDHKEAGAGG PAAMLQRSYG FSEMPVAGFS TASSLKGGGE GGGGGGSAPS  180
LIRHSSSPAG FLNQLTADNL TRGTGNYSSQ GGCNGGHGIS RLKSQLSFKR QDSLSQISEV  240
SENMVDGISS DNGHRNATHS YATASFPMDA WDNTNTIVFS TTPNKRAKNI NGDILNSLSS  300
LEPQFSLPQT SLEMAAVEKL LQVPEDSVPC KVRAKRGCAT HPRSIAERER RTRISGKLKK  360
LQDLVPNMDK QTSYADMLDL AVQHIKGLQN EVQKLNKELE NCTCGCKQAL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.139430.0fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4478270.0AM447827.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X150157.8, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010650469.10.0PREDICTED: transcription factor bHLH128 isoform X2
SwissprotQ8H1023e-87BH128_ARATH; Transcription factor bHLH128
TrEMBLF6I3R90.0F6I3R9_VITVI; Uncharacterized protein
STRINGVIT_05s0124g00240.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]