PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013234001
Common NameVIT_02s0012g00570
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARR-B
Protein Properties Length: 558aa    MW: 61827.6 Da    PI: 6.1489
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013234001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.14e-28316370156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  GSVIVT01013234001 316 KMKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 370
                        5689*****************.********************************96 PP
2Response_reg32.73.8e-12201251109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+ dD+ + +  +r+ le+ +y +v ++ +  eal  +  k   +++ ++ ++  +   +++l++ +    +lp i++++    +++ +++
  GSVIVT01013234001  20 VLLLDDDTTSAAEIRSKLEEMDY-IVSTFCNENEALSAISSKPesFHVAIVEVSTGNNGSFKFLETAK----DLPTIMISSIHCLSTMMKCI 106
                        899********************.***************666666*******9999988888887643....699***************** PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                         +Ga +fl Kp ++++l++
  GSVIVT01013234001 107 ALGAVEFLRKPLSEDKLRN 125
                        ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.0E-1716160No hitNo description
SuperFamilySSF521721.85E-1716133IPR011006CheY-like superfamily
SMARTSM004487.5E-518127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011022.03919131IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.1E-920126IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.97E-1021130No hitNo description
PROSITE profilePS5129415.114313372IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-27314373IPR009057Homeodomain-like
SuperFamilySSF466891.43E-18315373IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-25316370IPR006447Myb domain, plants
PfamPF002499.9E-9319368IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MVCTANDLQE WKDFPKGLRV LLLDDDTTSA AEIRSKLEEM DYIVSTFCNE NEALSAISSK  60
PESFHVAIVE VSTGNNGSFK FLETAKDLPT IMISSIHCLS TMMKCIALGA VEFLRKPLSE  120
DKLRNIWQHV VHKAFNAGGS VLPESLKPVK ESVASMLQLQ MENEEPRNES SAETLNVSNV  180
HENDHMQSAG TDKYPAPSTP QLKQGGRSLD DGDCLDQTNC STEKESGEQD GESKSVETTC  240
GTSVAEVTAQ VSPPQGLGES VIKEEDDSAD GCKSESNMSP HPQNKDSLSE FGGDARNPRK  300
ASGVHSPCGT RANRKKMKVD WTPELHKKFV QAVEQLGVDQ AIPSRILELM KVEGLTRHNV  360
ASHLQKYRMH RRHILPKEDD RRWPHQRDPM QRNYYPQKPV MAFPPYHSSH TLPAAQLYPV  420
WGQPSSHPAQ MWSTPGYHTW QPAESWIWKP YPGMNADAWG CPVMTPTHTP CSSFPQNPSG  480
FDHNNGSGIY NTGIPQSPID LYPAEELIDR VVKEAISKPW MPLPLGLKPP ATESVLAELS  540
RQGISTIPPH INTPRPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-17321370655Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.54440.0bud| flower| fruit| inflorescence
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3936110.0FQ393611.1 Vitis vinifera clone SS0AFA25YC03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279150.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-150APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A438JZR00.0A0A438JZR0_VITVI; Two-component response regulator-like APRR2
STRINGVIT_02s0012g00570.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9166813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-152ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]