PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012246001
Common NameVIT_01s0011g00140
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family YABBY
Protein Properties Length: 161aa    MW: 17632.1 Da    PI: 8.7694
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012246001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY145.94.1e-4521442163
              YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                        d++  se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l  +         ++   l+ +  ++++  ++v       n+ ++ ++s
  GSVIVT01012246001   2 DLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFL---------STRPPLQGQCLDHQMSLQGVC------NDFRKGQSS 78 
                        77899*************************************97543.........223333333333322222221......222222222 PP

              YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                        +s s    s++++  +p++p v++PPek+ r Psaynrf+keeiqrik +nP+i hreafsaaaknWa +
  GSVIVT01012246001  79 SSSS----STSSEPVSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKVANPEIPHREAFSAAAKNWARY 144
                        2222....345667889999************************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-546144IPR006780YABBY protein
SuperFamilySSF470953.67E-888142IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.0E-598143IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009032anatomypetal
PO:0007016developmental stagewhole plant flowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDLVPPSEHL CYVRCNFCNT VLAVGIPCKR LLDTVTVKCG HCSNLSFLST RPPLQGQCLD  60
HQMSLQGVCN DFRKGQSSSS SSSTSSEPVS PKAPFVVKPP EKKHRLPSAY NRFMKEEIQR  120
IKVANPEIPH REAFSAAAKN WARYIPNSPA GSVSESSNNE *
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected during flower and leaf development. Expression in the flower meristem in the early stage of flower development. When carpel primordia begin to form, specific and uniform expression in carpel primordia. Expression in the central region of the leaf plastochron 1 (P1) primordia. Detected up to P4 stage, hardly detected in the P5 leaves. {ECO:0000269|PubMed:14729915}.
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4634663e-66AM463466.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X160637.12, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263611.11e-116PREDICTED: protein CRABS CLAW isoform X2
SwissprotQ76EJ09e-69YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLD7T9Z41e-115D7T9Z4_VITVI; Uncharacterized protein
STRINGVIT_01s0011g00140.t011e-115(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP90691114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.18e-66YABBY family protein