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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSVIVT01012246001 |
| Common Name | VIT_01s0011g00140 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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| Family |
YABBY |
| Protein Properties |
Length: 161aa MW: 17632.1 Da PI: 8.7694 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01012246001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 145.9 | 4.1e-45 | 2 | 144 | 2 | 163 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93
d++ se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l + ++ l+ + ++++ ++v n+ ++ ++s
GSVIVT01012246001 2 DLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFL---------STRPPLQGQCLDHQMSLQGVC------NDFRKGQSS 78
77899*************************************97543.........223333333333322222221......222222222 PP
YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
+s s s++++ +p++p v++PPek+ r Psaynrf+keeiqrik +nP+i hreafsaaaknWa +
GSVIVT01012246001 79 SSSS----STSSEPVSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKVANPEIPHREAFSAAAKNWARY 144
2222....345667889999************************************************76 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 161 aa
Download sequence Send
to blast |
MDLVPPSEHL CYVRCNFCNT VLAVGIPCKR LLDTVTVKCG HCSNLSFLST RPPLQGQCLD 60
HQMSLQGVCN DFRKGQSSSS SSSTSSEPVS PKAPFVVKPP EKKHRLPSAY NRFMKEEIQR 120
IKVANPEIPH REAFSAAAKN WARYIPNSPA GSVSESSNNE *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Detected during flower and leaf development. Expression in the flower meristem in the early stage of flower development. When carpel primordia begin to form, specific and uniform expression in carpel primordia. Expression in the central region of the leaf plastochron 1 (P1) primordia. Detected up to P4 stage, hardly detected in the P5 leaves. {ECO:0000269|PubMed:14729915}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM463466 | 3e-66 | AM463466.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X160637.12, clone ENTAV 115. |
