PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011962001
Common NameVIT_01s0011g02920
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TCP
Protein Properties Length: 405aa    MW: 44886.9 Da    PI: 10.3531
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011962001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1601.3e-49632212134
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec.eaess 78 
                        +gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd LGfdk+sktieWL++++k+aikeltg+              ++s++s + ++++s
  GSVIVT01011962001  63 TGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDILGFDKASKTIEWLFTKSKAAIKELTGNlpqikhiggggtsgGTSASSISeSKGTS 154
                        79******************************************************************999999988744444333433333 PP

                TCP  79 sssasnsssg..........kaaksaa.kskksqksaasalnlakesrakarararertrekmrikn 134
                        + ++ +++ +          +  ++ + k++++++s+++ + lakesr+karararertrekm +++
  GSVIVT01011962001 155 RLKEIAHNGEpkgivtngesSVLTTPKeKKNRKPRSKSALNPLAKESREKARARARERTREKMIMRS 221
                        333333333358888988764444444466677777777899999******************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.4E-4763219IPR005333Transcription factor, TCP
PROSITE profilePS5136936.88965123IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.344199216IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MLVDRSGAQG DQSEINAAAS NKTTSVDKET SSDVVADQQQ EPLEVPPMKK SDSAKKSVPR  60
KRTGKKDRHS KIYTAQGPRD RRMRLSLQIA RKFFDLQDIL GFDKASKTIE WLFTKSKAAI  120
KELTGNLPQI KHIGGGGTSG GTSASSISES KGTSRLKEIA HNGEPKGIVT NGESSVLTTP  180
KEKKNRKPRS KSALNPLAKE SREKARARAR ERTREKMIMR SLEKSKQCSE ANPNNLEHTH  240
SLEHQMATVG IIEKFLGIPS SSTSSSIFNY SPNIAVSSGV NSNNFPCFPG NWDIDDSRIH  300
SGYSAMTNMG PSTGNFQDQN PTSVFMTTTN VRQQNPTSLF MTTSNRRLES QCYFVLMSSL  360
LVPCLKYYPF VFGRTNYDLI FTIILIIICA FFQFHIFHSL SQQI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4485310.0AM448531.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X105762.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647995.10.0PREDICTED: transcription factor PCF5 isoform X1
TrEMBLF6HF180.0F6HF18_VITVI; Uncharacterized protein
STRINGVIT_01s0011g02920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-30TCP domain protein 12