PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011943001
Common NameLOC100252639, VIT_01s0011g03100
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 276aa    MW: 30461 Da    PI: 7.9115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011943001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05109128120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++C+ C+k+F+r  n++ H+
  GSVIVT01011943001 109 FSCTVCNKTFNRYNNMQMHM 128
                        89*****************9 PP
2zf-C2H215.64.6e-05194216123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C +Cgk F  + + ++H +++
  GSVIVT01011943001 194 FSCRKCGKAFAVRGDWRTHEKNC 216
                        89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.67E-5105130No hitNo description
SMARTSM003550.079109131IPR015880Zinc finger, C2H2-like
PfamPF128749.5E-5109128No hitNo description
PROSITE profilePS5015710.367109136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.2E-6109128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SMARTSM00355200157189IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.34E-6179214No hitNo description
Gene3DG3DSA:3.30.160.603.8E-6180214IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.912194214IPR007087Zinc finger, C2H2
SMARTSM0035545194214IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MQTPSFACIS SSESACLEAD EEDEDSILLS LCPPGQSTSK RAIYHPSSSK PQNYQNTNRE  60
DGVTVALHIG PPNACASTSN PNNINGGDPV EGQYWIPSPA QILVGPTQFS CTVCNKTFNR  120
YNNMQMHMWG HGSQYRKGPE SLRGTKPASS ILRLPCYCCA QGCKNNIEHP RSKPLKDFRT  180
LQTHYKRKHG AKPFSCRKCG KAFAVRGDWR THEKNCGKLW FCICGSDFKH KRSLKDHVRA  240
FGDGHAPHSV EMYGVEEEDD NDDDHGNGGH GSVLC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4794160.0AM479416.1 Vitis vinifera contig VV78X092863.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647907.10.0PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-124ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A438FYS00.0A0A438FYS0_VITVI; Zinc finger protein WIP6
TrEMBLD7T9880.0D7T988_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03100.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-127C2H2-like zinc finger protein