PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011942001
Common NameVIT_01s0011g03110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 357aa    MW: 39255.4 Da    PI: 8.1641
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011942001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.9e-32188243156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  GSVIVT01011942001 188 KARRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 243
                        68****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.219185245IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-28185246IPR009057Homeodomain-like
SuperFamilySSF466892.54E-18186246IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-27188243IPR006447Myb domain, plants
PfamPF002491.4E-7190241IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MQRCHDYIEA LEEERRKIQV FQRELPLCLE LVSQAIESCR QQMSGTTQEY FHGQSECSEQ  60
TSSDGPVLEE FIPIKKTSDD EDEQQSHQPN DNKDKNNDKS GKKSDWLRSV QLWNQTPDPP  120
VKEDTPKKIP SMEVKKNGGA FHPFKRDKAV GTNPTSAPSA ATSSTAETAT GCSSGSRKEE  180
KEGQSQRKAR RCWSPELHRR FLHALQQLGG SHVATPKQIR ELMKVDGLTN DEVKSHLQKY  240
RLHTRRPNPA IQHNGNPQAP QFVVVGGIWV PPPEYTAVAA TTSSGEATGV TTANGIYAPV  300
ASVPPSHPQG STQRQQPMKP KKSQSEERGS HSEGGVQSNS PATSSSTHTT TTSPVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13188241255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13188241255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-13188241154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13188241154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13188241154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13188241154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13188241255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13188241255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13188241255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13188241255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13188241255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13188241255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3836300.0FQ383630.1 Vitis vinifera clone SS0ABG1YE07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631224.10.0PREDICTED: myb family transcription factor EFM
SwissprotQ9FPE81e-109HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A438ECN50.0A0A438ECN5_VITVI; Transcription factor HHO3
STRINGVIT_01s0011g03110.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP54151221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-101G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]