PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01011942001

Common Name

VIT_01s0011g03110

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

G2-like

Protein Properties

Length: 357aa MW: 39255.4 Da PI: 8.1641

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01011942001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.4	2.9e-32	188	243	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ GSVIVT01011942001 188 KARRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 243 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.219	185	245	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-28	185	246	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.54E-18	186	246	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.7E-27	188	243	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	190	241	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MQRCHDYIEA LEEERRKIQV FQRELPLCLE LVSQAIESCR QQMSGTTQEY FHGQSECSEQ 60 TSSDGPVLEE FIPIKKTSDD EDEQQSHQPN DNKDKNNDKS GKKSDWLRSV QLWNQTPDPP 120 VKEDTPKKIP SMEVKKNGGA FHPFKRDKAV GTNPTSAPSA ATSSTAETAT GCSSGSRKEE 180 KEGQSQRKAR RCWSPELHRR FLHALQQLGG SHVATPKQIR ELMKVDGLTN DEVKSHLQKY 240 RLHTRRPNPA IQHNGNPQAP QFVVVGGIWV PPPEYTAVAA TTSSGEATGV TTANGIYAPV 300 ASVPPSHPQG STQRQQPMKP KKSQSEERGS HSEGGVQSNS PATSSSTHTT TTSPVF*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MQRCHDYIEA LEEERRKIQV FQRELPLCLE LVSQAIESCR QQMSGTTQEY FHGQSECSEQ  60
TSSDGPVLEE FIPIKKTSDD EDEQQSHQPN DNKDKNNDKS GKKSDWLRSV QLWNQTPDPP  120
VKEDTPKKIP SMEVKKNGGA FHPFKRDKAV GTNPTSAPSA ATSSTAETAT GCSSGSRKEE  180
KEGQSQRKAR RCWSPELHRR FLHALQQLGG SHVATPKQIR ELMKVDGLTN DEVKSHLQKY  240
RLHTRRPNPA IQHNGNPQAP QFVVVGGIWV PPPEYTAVAA TTSSGEATGV TTANGIYAPV  300
ASVPPSHPQG STQRQQPMKP KKSQSEERGS HSEGGVQSNS PATSSSTHTT TTSPVF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-13	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-13	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-13	188	241	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-13	188	241	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-13	188	241	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-13	188	241	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-13	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-13	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-13	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-13	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-13	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-13	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ383630	0.0	FQ383630.1 Vitis vinifera clone SS0ABG1YE07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003631224.1	0.0	PREDICTED: myb family transcription factor EFM
Swissprot	Q9FPE8	1e-109	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A438ECN5	0.0	A0A438ECN5_VITVI; Transcription factor HHO3
STRING	VIT_01s0011g03110.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5415	12	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-101	G2-like family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01011942001

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]