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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01011902001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
ERF |
Protein Properties |
Length: 346aa MW: 39049.6 Da PI: 5.578 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01011902001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 62.9 | 6.9e-20 | 93 | 142 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54
s+y+GVr++k +g+W+AeIrd + r r++lg++ t+eeAaka++ r+++e
GSVIVT01011902001 93 SKYRGVRQRK-WGKWAAEIRDpF-----RgVRVWLGTYNTPEEAAKAYESKRLEFE 142
89*******9.**********66.....56**********************9987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MPFKRAKEIC SDFKMRKIRV ICYDPEATDS SSSEDEGGIS KREKRGKRIV REINLPVAGS 60 PQSNAIETES SCQDSNNGGK NPKKRFLRKP PSSKYRGVRQ RKWGKWAAEI RDPFRGVRVW 120 LGTYNTPEEA AKAYESKRLE FEAMAASANK SQNVSSSTST SHYNGGGHGT DTTKEGVGTN 180 LIHANGAEQQ KPISDFAEEP LMAPPIGQEL NMEAEFESFF DDNNWGRILD DFNCLDDLRI 240 FGFDNEEPSD LPDFDFDLGN DDACVSDFYL FVCRETWRGM SSLYKERESS GFSCAVRAVQ 300 GLSILNPPWR VATGSPQFCS FAPPFSFYKF YIYIYKFYMF GVQFL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM473189 | 0.0 | AM473189.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X194508.12, clone ENTAV 115. |
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |