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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01011823001 | ||||||||
Common Name | VIT_01s0011g04220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | G2-like | ||||||||
Protein Properties | Length: 501aa MW: 55702.1 Da PI: 9.8413 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 67.8 | 1.8e-21 | 195 | 247 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 + +rWtp+LH +F ea+++L G++kA Pk+ilelmkv++L h+ SHLQkY+ GSVIVT01011823001 195 QCMRWTPDLHFKFTEAIRKL-GEKKASPKAILELMKVPDLRQGHISSHLQKYKA 247 569*****************.9******************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 11.031 | 1 | 44 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 7.2E-7 | 8 | 72 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-21 | 192 | 250 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.4E-12 | 193 | 251 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.9E-18 | 196 | 247 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-5 | 197 | 246 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0004709 | anatomy | axillary bud | ||||
PO:0025529 | developmental stage | bud dormancy stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MFGMMSSRYP GKIVAEQALR NGACFFLQKP VSDNDLRDLW QHVYRKRRSS EFPKERSKSQ 60 GVKIKEESAS AFRNDWFREV GSVSRTNSRT ANENDLHGTN HEQWIADLKG KNKQIKPDSG 120 LVKGDAQTTE RELLRMAADQ KPGCNDRKRS NEDNTEKRKC KRKIYSEQIH SQGISPIEED 180 GNEKKQKSST LEKRQCMRWT PDLHFKFTEA IRKLGEKKAS PKAILELMKV PDLRQGHISS 240 HLQKYKAQVQ SMLDTCGNTP LPLPSSVNIS TSNGNRQMGV PQFQERQGSV GVNANSSLQL 300 HPPLSLKASP VPGNAGPSNS TEHKQHPNPT KNNNGVQMVG YGKHQGTSQI RERTGPFPSD 360 VNMNENGKGK QPLGFQGNSD PYVALDQAAL HRLTAQQCWQ SLTQFPTPFK RLTEAQNLVP 420 RLTSSAGRPN SDIPDGINTT DDAIPRLAHL ANSANQSVAH APGTGHGGLD ESGYDWLTEW 480 LSRSLDEDNP DARNFDGPDK * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM453978 | 0.0 | AM453978.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X001301.9, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010663550.1 | 0.0 | PREDICTED: two-component response regulator-like PRR95 isoform X1 | ||||
TrEMBL | F6HEU5 | 0.0 | F6HEU5_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0011g04220.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8222 | 3 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04450.1 | 3e-14 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01011823001 |