PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011823001
Common NameVIT_01s0011g04220
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 501aa    MW: 55702.1 Da    PI: 9.8413
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011823001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.81.8e-21195247255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        + +rWtp+LH +F ea+++L G++kA Pk+ilelmkv++L   h+ SHLQkY+ 
  GSVIVT01011823001 195 QCMRWTPDLHFKFTEAIRKL-GEKKASPKAILELMKVPDLRQGHISSHLQKYKA 247
                        569*****************.9******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011011.031144IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23007.2E-7872No hitNo description
Gene3DG3DSA:1.10.10.603.4E-21192250IPR009057Homeodomain-like
SuperFamilySSF466893.4E-12193251IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-18196247IPR006447Myb domain, plants
PfamPF002491.0E-5197246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0004709anatomyaxillary bud
PO:0025529developmental stagebud dormancy stage
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MFGMMSSRYP GKIVAEQALR NGACFFLQKP VSDNDLRDLW QHVYRKRRSS EFPKERSKSQ  60
GVKIKEESAS AFRNDWFREV GSVSRTNSRT ANENDLHGTN HEQWIADLKG KNKQIKPDSG  120
LVKGDAQTTE RELLRMAADQ KPGCNDRKRS NEDNTEKRKC KRKIYSEQIH SQGISPIEED  180
GNEKKQKSST LEKRQCMRWT PDLHFKFTEA IRKLGEKKAS PKAILELMKV PDLRQGHISS  240
HLQKYKAQVQ SMLDTCGNTP LPLPSSVNIS TSNGNRQMGV PQFQERQGSV GVNANSSLQL  300
HPPLSLKASP VPGNAGPSNS TEHKQHPNPT KNNNGVQMVG YGKHQGTSQI RERTGPFPSD  360
VNMNENGKGK QPLGFQGNSD PYVALDQAAL HRLTAQQCWQ SLTQFPTPFK RLTEAQNLVP  420
RLTSSAGRPN SDIPDGINTT DDAIPRLAHL ANSANQSVAH APGTGHGGLD ESGYDWLTEW  480
LSRSLDEDNP DARNFDGPDK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4539780.0AM453978.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X001301.9, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663550.10.0PREDICTED: two-component response regulator-like PRR95 isoform X1
TrEMBLF6HEU50.0F6HEU5_VITVI; Uncharacterized protein
STRINGVIT_01s0011g04220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8222311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.13e-14G2-like family protein