PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011587001
Common NameLOC100262958, VIT_01s0011g06400, VITISV_033421
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 388aa    MW: 43061.8 Da    PI: 8.5963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011587001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-065880123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C++C++ F r  nL+ H r+H
  GSVIVT01011587001 58 YVCEICNQGFQRDQNLQMHRRRH 80
                       9*********************9 PP
2zf-C2H216.32.8e-05135157123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C+k +  +s++k H++t+
  GSVIVT01011587001 135 WVCEKCSKGYAVQSDYKAHLKTC 157
                        58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.89E-55780No hitNo description
PROSITE profilePS5015710.975880IPR007087Zinc finger, C2H2
SMARTSM003550.00525880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035513099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-4126156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.89E-5130155No hitNo description
SMARTSM0035560135162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MLENTAAAST APSSSSDAFT SLENGVCNKR KRRPAGTPDP DAEVVSLSPK TLLESDRYVC  60
EICNQGFQRD QNLQMHRRRH KVPWKLLKRE TQEVKKRVFV CPEPSCLHHD PLHALGDLVG  120
IKKHFRRKHS NHKQWVCEKC SKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ  180
DACAVRQVRP ELQTLQPACS SRTASSTSPS SDNNFSRVQL PGLTLPKPAE TVFLCLERNN  240
PSPSDLQHNL ELRLLPSPNT SSPREMNTAE PALAASRLKE LASEQLKLAM AEKASAEEAR  300
REAKRQIELA ELEFANARRI RQQAQAELEK AQILKEQAIK KVSSTILQIT CHACKHQFQA  360
TAAGAPSDET SLAMSYMSSA LTEGEGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-18133183555Zinc finger protein JACKDAW
5b3h_F4e-18133183555Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons and the vasculature of reosette leaves. Weak expression in hypocotyls and floral organs, but not detected in roots and inflorescence stems. {ECO:0000269|PubMed:24039602}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4237190.0AM423719.2 Vitis vinifera contig VV78X143442.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285189.10.0PREDICTED: protein SHOOT GRAVITROPISM 5
SwissprotQ9C9X71e-151IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A438DGK40.0A0A438DGK4_VITVI; Protein SHOOT GRAVITROPISM 5
TrEMBLA5ADE60.0A5ADE6_VITVI; Uncharacterized protein
STRINGVIT_01s0011g06400.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-136indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Velasco R, et al.
    A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.
    PLoS ONE, 2007. 2(12): p. e1326
    [PMID:18094749]
  2. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]