PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011502001
Common NameVIT_14s0108g01540
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family FAR1
Protein Properties Length: 856aa    MW: 97537.4 Da    PI: 6.3426
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011502001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1101.77.4e-32123217190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                        +fYn+YAk++GFs+r+++ ++sk++++i++r+f+Cskeg+r+e++ k     ++++rr r+ tr gCka ++v+++++g+w+v+kle++HnH
  GSVIVT01011502001 123 NFYNAYAKQMGFSIRVNSYYRSKKDNSIISREFCCSKEGFRREKRAKmelgdDTRRRRARPITREGCKALMTVRRRDNGRWYVAKLEKDHNH 214
                        6******************************************99999***9999************************************* PP

               FAR1  88 ela 90 
                        el+
  GSVIVT01011502001 215 ELV 217
                        *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-29123217IPR004330FAR1 DNA binding domain
PfamPF105511.8E-32338431IPR018289MULE transposase domain
PROSITE profilePS5096611.325620656IPR007527Zinc finger, SWIM-type
SMARTSM005753.4E-9631658IPR006564Zinc finger, PMZ-type
PfamPF044348.2E-9631655IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MQPTNPKSQP LVLPNENNPT ADISHSQFLS TRDKARGRYL LVFVLGAVLV SQWPNSFELM  60
DSYVTLEDEG DECCVVEDVE TPIVLDDAQK DDSASLDFSQ YLTGGVIEPT LDMEFTSEED  120
ARNFYNAYAK QMGFSIRVNS YYRSKKDNSI ISREFCCSKE GFRREKRAKM ELGDDTRRRR  180
ARPITREGCK ALMTVRRRDN GRWYVAKLEK DHNHELVTPA MRQFLRSHKQ EYDPKKGSVN  240
SLSSPVMEMS PPMNTLTGDC DSFGKMVFPQ QDHVNYVGRG RLSTFGIDAQ GLLGFFKIMQ  300
VSDPAFFYAI QVDEEDRLSS VFWVDTRSRI AYNCFSDVVA FDTTYQVNQY KMPFAPFTGL  360
NHHKQSVLFG CALLADETES TFIWLFTTWL ESMSGRQPGL IITDYDSAIS RAVQRVFSES  420
NHQYCKWHIM SKMPKEMGHA YSALPKTFQV EFDKCINKSE TPEEFESAWE LLLDKYNLRG  480
NEWLQSLYFD RKEWVPTYIR DIFFAGMYAT QRSGSVNSLF DGYVNARTTL QDFAEKYEKA  540
LDDRYEKEAR AEFETFYTKP VLKTPLPMEK QAAEVYTRKM FTIFQDELFE SLVLAVKLTG  600
ADEGSHTYEV ARFDEEHKVY FVALNVSKQI GSCSCKMFEF EGILCRHMLA VFKATNIFTL  660
PPHFILKRWT RSAKDEAILD VMPCVEMQGN SQKGKNSQYN ILYQEAIKCA EEGMASDHSF  720
KVALSALREA RIKIIGAKNN AISAPKLETM ASASYRDESN TIGSQVDSTS VLITPLNPRK  780
TKTRGSSTDN NISKYASELS SSRTRLCAKC KCPGHDSHTC LWLKDSGPSS SLDHQKENFV  840
CTDSPCGMGD DIPLK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4253540.0AM425354.2 Vitis vinifera contig VV78X102512.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661125.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLD7SXJ20.0D7SXJ2_VITVI; Uncharacterized protein
STRINGVIT_14s0108g01540.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5