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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | GSVIVT01011472001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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| Family | WRKY | ||||||||
| Protein Properties | Length: 890aa MW: 97720.1 Da PI: 9.0853 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 105.8 | 2.2e-33 | 774 | 832 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Cts gC+v+k+ver+++dpk+v++tYeg+Hnh+
GSVIVT01011472001 774 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSLGCNVRKHVERASTDPKAVITTYEGKHNHD 832
59********************************************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF50814 | 4.96E-21 | 76 | 169 | IPR011038 | Calycin-like |
| Gene3D | G3DSA:2.40.128.20 | 1.1E-29 | 80 | 254 | IPR012674 | Calycin |
| Pfam | PF12204 | 5.7E-15 | 84 | 406 | IPR022017 | Domain of unknown function DUF3598 |
| SuperFamily | SSF50814 | 4.96E-21 | 196 | 254 | IPR011038 | Calycin-like |
| SuperFamily | SSF50814 | 2.3E-29 | 269 | 411 | IPR011038 | Calycin-like |
| Gene3D | G3DSA:2.40.128.20 | 1.7E-41 | 269 | 412 | IPR012674 | Calycin |
| Gene3D | G3DSA:2.20.25.80 | 7.0E-5 | 681 | 701 | IPR003657 | WRKY domain |
| Gene3D | G3DSA:2.20.25.80 | 9.6E-37 | 759 | 834 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 3.27E-29 | 766 | 834 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 38.871 | 769 | 834 | IPR003657 | WRKY domain |
| SMART | SM00774 | 6.6E-40 | 774 | 833 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 7.1E-26 | 775 | 832 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 890 aa Download sequence Send to blast |
MAAISPISVS PIPKTLIPTR TQKLPPTTSF RYPKPYSLSI SSIRSPKTRA ADFSSFSAIV 60 GQDLHSDADE SIGLDTLKRF IDINLGCWNG SFYQFDSLGN LTQKVSTKLA VGSYGEDELI 120 SLIQTLYIKQ PPSSTSCSGD DDEPAWAEYK IKEINLFTVD KYQQIGFFSN ERAFALRYQT 180 AGMLETVLRQ GVLGEDDSGE ESPKNLKLPS RRPSIVCENC LYSQESDLRA RAFHIMDPKG 240 ILDMLGIFLE ERGNGKSFPP SIDISKDKTN RITPFLGKWK GRSVTKRSGV YGSTIAEANT 300 VSLLEINDND QLVQDISSTS TSGGGDVTTN VHWTGALSGN LATFEGGFQM TLLPGGMYMG 360 YPSDIAKSVA ESKSFHLEFC WLESPGKRQR LVRTYDMEGL AVSSTHFSET RVWRCMNPHL 420 RTWIPTKAKM KTKREGELGN GSGATKGTPV SKKTKKSAVL RRLSTKSIRE KGVLEGWKLN 480 PNYGELTELS MAQNDTSSFS SKVVAPSRPT IALPPRSSMD AFFFAATSPG PMTLVSSFFS 540 DNYPDSDCRS FSQLLAGAMA SPGARPTLLS GFRQNRPLSL AVARSPMFSI PPGLSPSGLL 600 NSPGFFSPLQ SPFGMSHQQA LAQVTAQAAL SQSHMFIQAE YQPSSLEAPQ VPPLPSDPKS 660 SMTESSEVSH SDRKSQPPSL VVDKPGDDGY NWRKYGQKQG STTMNLNRPN ETVNGSSDSE 720 EVGDAETRVK EDDDDDEPNP KRRQVAAPAE VVSSHKTVTE PRIIVQTRSE VDLLDDGYRW 780 RKYGQKVVKG NPHPRSYYKC TSLGCNVRKH VERASTDPKA VITTYEGKHN HDVPAARNSS 840 HNTANSNATQ LKQHNVVAEK RALLKEMGFR NKDKKPVALL QLKEEQIAV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5yvf_A | 1e-167 | 57 | 412 | 3 | 357 | BFA1 |
| 5yvf_B | 1e-167 | 57 | 412 | 3 | 357 | BFA1 |
| 5yvf_C | 1e-167 | 57 | 412 | 3 | 357 | BFA1 |
| 5yvf_D | 1e-167 | 57 | 412 | 3 | 357 | BFA1 |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Vvi.28544 | 0.0 | flower| inflorescence | ||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AM886166 | 0.0 | AM886166.1 Vitis thunbergii mRNA for DNA-binding protein (wrky5 gene). | |||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP7969 | 2 | 2 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G03340.1 | 4e-55 | WRKY DNA-binding protein 3 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | GSVIVT01011472001 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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