PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011433001
Common NameLOC100254372, VIT_14s0108g00980
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Dof
Protein Properties Length: 402aa    MW: 43623.2 Da    PI: 6.3519
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011433001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.48.7e-40142202262
             zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                        ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s+
  GSVIVT01011433001 142 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNST 202
                        7899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-31139199IPR003851Zinc finger, Dof-type
PfamPF027012.9E-32144200IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.975146200IPR003851Zinc finger, Dof-type
PROSITE patternPS013610148184IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAEAKDPAIK LFGKTIPLPE VATAAAGNDS PSGATVGGGG EDWVDQNRAT NSSPEEDCVR  60
AGEEGREVDK DTSGGKVTDT RQEDGARSST SEEFTDPDAN SGVNENPKTP SADKETATLK  120
CSKNEEEQSE TSISQEKTLK KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW  180
TAGGTMRNVP VGAGRRKNKN STSHYRHITV SEALQSARTD VPNGIHHPAL KTNGTVLTFG  240
SDTPLCESMA SVLNLAEKTM RNCTPNGFHK PEKLRIPVPY GDQVMRNLPP PAFCPSGFPM  300
PFYPAAAYWG CTVPGAWNIP WVPQPSALNH TAPSSGPNSP TLGKHSRDEN MLKASNFGEE  360
ELQKENNSER SDEKNHIAET SPVLQANPAA LSRSLNFHES S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.179730.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269|PubMed:19619493}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4516330.0AM451633.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X095025.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283706.10.0PREDICTED: cyclic dof factor 2
SwissprotQ93ZL54e-88CDF2_ARATH; Cyclic dof factor 2
TrEMBLF6H5U50.0F6H5U5_VITVI; Uncharacterized protein
STRINGVIT_14s0108g00980.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-85cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]