PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011241001
Common NameVIT_13s0106g00370
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 256aa    MW: 29053.9 Da    PI: 9.7831
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011241001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.7e-08135180346
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                         W+  Ed  l++a k ++++   +W++Ia+ ++ gR+   c  r+  
  GSVIVT01011241001 135 GWSSGEDIALLNALKAFPKDvpmRWEKIAAAVP-GRSKAACMKRFSE 180
                        6********************************.********99965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.3684296IPR017877Myb-like domain
SMARTSM007172.14699IPR001005SANT/Myb domain
PROSITE profilePS500907.851128182IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.1E-8130182IPR009057Homeodomain-like
SuperFamilySSF466891.48E-11132183IPR009057Homeodomain-like
SMARTSM007171.2E-7132184IPR001005SANT/Myb domain
PfamPF002494.3E-7135180IPR001005SANT/Myb domain
CDDcd001672.64E-6136182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSPPPSNRRP RLRKVETATF RSPVATSVEG DNGLARVEKR SEVAAEERDW VDGDVEILKK  60
QLLKHPVGMP GRWEAVAEAF QGRHGVESVI RKAKSLGEKK LSDSDSFNRF LKDRKPVDKR  120
VEDAMAMENG EKKEGWSSGE DIALLNALKA FPKDVPMRWE KIAAAVPGRS KAACMKRFSE  180
LKKDFRNPKL LLRSNCVEEV IVLIYRMNIN VCFLLFQLFI MICLSTQTEI LVVISPTILC  240
YLSSFYFEIR KILYC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1713RRPRLRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4593340.0AM459334.2 Vitis vinifera contig VV78X259775.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010658763.11e-144PREDICTED: dnaJ homolog subfamily C member 2
SwissprotQ9ASQ25e-56MAMYB_ARATH; Transcription factor MAMYB
TrEMBLD7TXL00.0D7TXL0_VITVI; Uncharacterized protein
STRINGVIT_13s0106g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP81421212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-58MYB_related family protein