|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
GSVIVT01011168001 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
Family |
Trihelix |
Protein Properties |
Length: 173aa MW: 20304.1 Da PI: 8.8026 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01011168001 | genome | Genoscope | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 80.2 | 3e-25 | 18 | 100 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+ qe+++ + +r e+++++ ++k++k lWe +++km+e+g++rs+ qCk+kw+nl +ryk ++++e + ++++p++++l+
GSVIVT01011168001 18 QWSIQETKEFLMIRAELDRTFMETKRNKLLWEVIANKMKEKGYNRSADQCKCKWKNLVTRYKGCETMEPEA---MRQQFPFYNELQ 100
7********************************************************************95...56689*****98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 173 aa
Download sequence Send
to blast |
MEGHHISVHI DTGDRFPQWS IQETKEFLMI RAELDRTFME TKRNKLLWEV IANKMKEKGY 60 NRSADQCKCK WKNLVTRYKG CETMEPEAMR QQFPFYNELQ AIFTARMQRM LWIEAEGGAK 120 KKGVQLSSED EDENEESEGE KGSSKKKKKG KTTKADERRH SMGMFSFEWG YV*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AM448719 | 1e-130 | AM448719.1 Vitis vinifera contig VV78X184874.7, whole genome shotgun sequence. |