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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01011146001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | TALE | ||||||||
Protein Properties | Length: 490aa MW: 54860.1 Da PI: 8.7982 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.9 | 9.8e-10 | 348 | 385 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + GSVIVT01011146001 348 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 385 564459******************************88 PP | |||||||
2 | BELL | 126.9 | 7.4e-41 | 212 | 283 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakLl++l+eV++rY+qy++q+q+vissFe++ag+gsak Yt+lAl++iS++FrcLkdai++qi GSVIVT01011146001 212 ERQEIQMKKAKLLNMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALQTISKQFRCLKDAISGQI 283 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.4E-67 | 145 | 281 | IPR006563 | POX domain |
Pfam | PF07526 | 6.2E-50 | 150 | 280 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.098 | 326 | 389 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-9 | 329 | 393 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.36E-11 | 329 | 390 | No hit | No description |
SuperFamily | SSF46689 | 4.71E-17 | 331 | 396 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-29 | 332 | 396 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.9E-18 | 346 | 385 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MKWYNNVKLA CVIFYNLVVG LVKGIPKREV GVRCLCYVFI ADDDEARAHS DFHHTRICLI 60 RPLQLLLHNS EPVDSGSKWV DSHTQIYHSS DINSKKEEIL FKIDGDSSIR SLPKPLFATT 120 AGLCDDMRIS GASSSSASGI SNGVSGMHGV ILSSKYLKAA QQLLDEVVNV GNGIKTETPS 180 KKSSSEATKT LGEGLIGGET STKRSADLST AERQEIQMKK AKLLNMLDEV EQRYRQYHHQ 240 MQIVISSFEQ AAGIGSAKTY TALALQTISK QFRCLKDAIS GQIRAANKSL GEEDGTGGKI 300 EGSRLKFVDH QLRQQRALQQ LGMIQQNVWR PQRGLPERSV SVLRAWLFEH FLHPYPKDSD 360 KHMLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYMEEVK DHEENGSGEK TSKSEDNNLE 420 DSFQIQTRQS HEQECSSSDL NGHSCNISHW RRKCPEPAQV HAHGAIRNGR DGPRKSKETK 480 EHRCPALPI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 1e-16 | 335 | 393 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-16 | 335 | 393 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-16 | 335 | 392 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 335 | 392 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 1e-16 | 335 | 393 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-16 | 335 | 393 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.6621 | 0.0 | bud| flower| fruit| inflorescence| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ381720 | 0.0 | FQ381720.1 Vitis vinifera clone SS0ABG87YE23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002266838.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_010653288.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_010653289.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_010653292.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_019077195.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_019077196.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-121 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | F6H6S8 | 0.0 | F6H6S8_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0105g00230.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-108 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01011146001 |
Publications ? help Back to Top | |||
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