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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01011138001 |
Common Name | LOC104880004, VIT_08s0105g00170 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
Dof |
Protein Properties |
Length: 271aa MW: 29628.9 Da PI: 6.5624 |
Description |
Dof family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01011138001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-Dof | 117.9 | 4.1e-37 | 14 | 69 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
+cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++
GSVIVT01011138001 14 PNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 69
58***************************************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 271 aa
Download sequence Send
to blast |
MEGGVWKANV EISPNCPRCG SSNTKFCYYN NYSLTQPRYF CKGCRRYWTK GGSLRNVPVG 60 GGCRKNRRGK SFRILTDRLA SKGLASDPDP DPSGSALADS ATTSSGLHDA SASNIDLALV 120 YANFLNQMPE PKSTGFEMPE LPCEFHPSFQ LSSTLSTSNT SLDSSHIQLP PDTHLSEDNQ 180 VYLSGFHPIH THHDHDSANI YGLPPLPGQE VASPEMLWPI SQAMVQNQTL HETQLPALHP 240 EAAQHPNHVA VTAGNWSPFD LSCYETFSRP *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM451060 | 0.0 | AM451060.2 Vitis vinifera contig VV78X060552.11, whole genome shotgun sequence. |
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |