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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01011123001 |
Common Name | VIT_07s0104g00090 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
bHLH |
Protein Properties |
Length: 621aa MW: 69303.6 Da PI: 5.7355 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01011123001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 44.1 | 3.6e-14 | 413 | 459 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+
GSVIVT01011123001 413 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 459
7999**********************8.....8*****************95 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010026 | Biological Process | trichome differentiation |
GO:0010214 | Biological Process | seed coat development |
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process |
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 621 aa
Download sequence Send
to blast |
MAAPPNSRLQ SMLQSAVQSV RWTYSLFWQI CPQQGILVWG DGYYNGAIKT RKTVQPMEVS 60 AEEASLQRSQ QLRELYESLS AGETNQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG 120 LPGKAYAKRH HIWLAGANEV DSKVFSRAIL AKSARVQTVV CIPLMDGVVE FGTTEKVQED 180 LGFVQHVKSF FTDHQLHNHP PKPALSEHST SNPATSSDHS QEEEEEEEEE EEEEEEEEEA 240 ESDSEAETGR NNRRLIQLEM SEGIRLGSPD DGSNNLDSDF HMLAVSQPGS SPPPQPPTGP 300 PPLDELSHED THYSQTVSTI LQHQPNRWSE SSSSGCIAPY SSQSAFAKWT TRCDHHHHPM 360 AVEGTSQWLL KYILFSVPFL HTKYRDENSP KSRDGDSAGR FRKGTPQDEL SANHVLAERR 420 RREKLNERFI ILRSLVPFVT KMDKASILGD TIEYVKQLRK KIQDLEARTR QMEVEQRSRG 480 SDSVRSKEHR IGSGGVDRNR AVVAGSDKRK LRIVEGSTGA KPKVVDSPPA AVEGGTTTVE 540 VSIIESDALL EMQCPYREGL LLDVMQMLRD LRLETTTVQS SLTNGVFVAE LRAKVKENAS 600 GKKASIMEVK RAINQIIPQC *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4rqw_A | 9e-23 | 8 | 191 | 12 | 192 | Transcription factor MYC3 |
4rqw_B | 9e-23 | 8 | 191 | 12 | 192 | Transcription factor MYC3 |
4rru_A | 1e-22 | 8 | 179 | 51 | 219 | Transcription factor MYC3 |
4rs9_A | 9e-23 | 8 | 191 | 12 | 192 | Transcription factor MYC3 |
4ywc_A | 1e-22 | 8 | 179 | 51 | 219 | Transcription factor MYC3 |
4ywc_B | 1e-22 | 8 | 179 | 51 | 219 | Transcription factor MYC3 |
4yz6_A | 9e-23 | 8 | 191 | 12 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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|
No. |
Start |
End |
Sequence |
1 | 417 | 422 | ERRRRE |
2 | 418 | 423 | RRRREK |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU447172 | 0.0 | EU447172.1 Vitis vinifera bHLH-like DNA binding protein (MYC1) mRNA, complete cds. |