PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011109001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 404aa    MW: 44851.7 Da    PI: 6.5511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011109001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-10271318255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+ +++ +rrRR ri +++  L+ llP++    ++   Ka++L   ++YIk+Lq
  GSVIVT01011109001 271 RQRASATDRRRRLRISERLKALQVLLPHS---EGG---KASVLDDIIDYIKHLQ 318
                        78889***********************8...555...677************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-12266329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-12267327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.556269317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7271318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-8275323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.81E-5285322No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MYVAEPYSIK ARHFHFHFSL SHFLHALIKT LEPSSYIGAA FAMGNMEEQS GHENPLQLMS  60
FSFGGSINDA SYVPKDDPSH HFTRGSGKNE NPPNALYLSQ WIHGQPTSHN YVKFLEESST  120
FPHKAPAKDI VDAIPLPVGS LHAVNGVSEI PSEVLYNSLA NACGFKLADP SLIMDAWKEN  180
LSVPVLNNHH EASTSAAGFL CSSQNEVTYL NPQNGGQVNK FTSTQYQICT QDCTSRTQEL  240
NEDNFNVSKH NSRVAIAPPC FQSKPRSSAS RQRASATDRR RRLRISERLK ALQVLLPHSE  300
GGKASVLDDI IDYIKHLQLQ IKDLSQSRLG GQSTSDPFIF LEGYGHYILH DQMLKEPLEE  360
MMGKLLEVNP SEATQLLEGR GLYVMPMTLV EGLLQTMVLL LEM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.141800.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4641630.0AM464163.2 Vitis vinifera contig VV78X009389.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003632365.20.0PREDICTED: transcription factor bHLH69 isoform X1
TrEMBLF6HQ710.0F6HQ71_VITVI; Uncharacterized protein
STRINGVIT_07s0104g00250.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1252844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.19e-17LJRHL1-like 2