PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01010967001

Common Name

LOC100249358, VIT_07s0104g01580

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

HB-other

Protein Properties

Length: 1085aa MW: 119254 Da PI: 9.5642

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01010967001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.6	6.8e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+++ g+t +qV+ +F +R + +k GSVIVT01010967001 69 KRPRDLLNPKAVKYMQAVFSIKDAISKKESREISALFGVTVTQVREFFAGQRSRVRK 125 799**************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.588	66	126	IPR001356	Homeobox domain
SMART	SM00389	3.4E-4	68	130	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.02E-6	68	129	IPR009057	Homeodomain-like
CDD	cd00086	1.49E-4	69	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-5	69	134	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	3.2E-4	225	320	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1085 aa Download sequence Send to blast
MEVLKENISE IDIGTSTASF KKFVDSQNEL FNSQVDQLGS IVLKQCELTG VNPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAISKKESRE ISALFGVTVT QVREFFAGQR 120 SRVRKVVRLS REKSVRSDVC KELQDGVLIP SDPMIPIDQA PLNSIGPSSA EEVPSCSTQA 180 EALHGLDDSE RYFLENIFTL MRKEETFSGQ VELMEWILQM QNSSVLNWFL SKGGMMILAT 240 WLSQAANEEQ TSVLLVILKA YIIVQVLCHL PLHKALPVHM SAILHSVNRL RFYRTSDISN 300 RARVLLSRWS KMLARIQPIK TSNSAKLSSD AQREIIMKQS IGEIMGDESW KSEINIPGQA 360 LAPFCENSET VRKLEPLQAL KLLPSSAEDT NRKSIRGVSS SQTRERRKVQ LVEQPGQKTA 420 GRILQPGRAV PVSHGRPMSA DDIQKAKMRA QFMQSKYGKI GSSSKDKHEA NSEGPSSKSS 480 SSQTSTLLSV SKAHGRPKIE ENKKPVTLPP RASNKVEASP QPKLELMETL FEKCKKVQIP 540 WQAPPEIRFN PAWRVGTGES SKEVEVQKNR IRREKETVYE ALQDIPPNPK EPWDLEMDYD 600 DSLTPVIPIE QPPDADSAAE SPIPPEPVVG PGETEKIAVA VVAPEPSSSS HAGNASSSNI 660 SSAALPDFEL LSVLLKNPEL VFALMNGQAG SLSSEDTVRL LDMIKANGVG SLGTLNGLGR 720 KAEEKVEVSL PSPTPSSNPV PVPSGWRPEF AKNPFSRQGL TVNSRDMYAS SPGVDFTGPA 780 RQVSMANIDI TGPPPQRQLP ATNLVLPPQT PAVIPPPQQP ANFPPLSQQP PPSAMLPSFS 840 LPQTTSVLPE KRLPSTVPSL HQNPPPNSSV LQSTTPEIVL NMNNFPAGGI PLPRLLAAAA 900 PSVRVETLSN HKPGSVVMNA PERGPISYSV PQMLPRPTRP LTQQQPSSML PPEPPHPLHH 960 TMPMGNLGPV PDSWRGRQGL ASNPLNQNNY NLPVGGALQH PPLTAPSRER NEYVFEDDFE 1020 TWSPEGSPSR TPEYMLGGHN PLEPRMSSGR NYGPERLRHQ HRNSSGYRDH NNKYGNRRWR 1080 DRRR*

Sequence ? help Back to Top

Protein Sequence Length: 1085 aa Download sequence Send to blast

MEVLKENISE IDIGTSTASF KKFVDSQNEL FNSQVDQLGS IVLKQCELTG VNPLSQEMAA  60
GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAISKKESRE ISALFGVTVT QVREFFAGQR  120
SRVRKVVRLS REKSVRSDVC KELQDGVLIP SDPMIPIDQA PLNSIGPSSA EEVPSCSTQA  180
EALHGLDDSE RYFLENIFTL MRKEETFSGQ VELMEWILQM QNSSVLNWFL SKGGMMILAT  240
WLSQAANEEQ TSVLLVILKA YIIVQVLCHL PLHKALPVHM SAILHSVNRL RFYRTSDISN  300
RARVLLSRWS KMLARIQPIK TSNSAKLSSD AQREIIMKQS IGEIMGDESW KSEINIPGQA  360
LAPFCENSET VRKLEPLQAL KLLPSSAEDT NRKSIRGVSS SQTRERRKVQ LVEQPGQKTA  420
GRILQPGRAV PVSHGRPMSA DDIQKAKMRA QFMQSKYGKI GSSSKDKHEA NSEGPSSKSS  480
SSQTSTLLSV SKAHGRPKIE ENKKPVTLPP RASNKVEASP QPKLELMETL FEKCKKVQIP  540
WQAPPEIRFN PAWRVGTGES SKEVEVQKNR IRREKETVYE ALQDIPPNPK EPWDLEMDYD  600
DSLTPVIPIE QPPDADSAAE SPIPPEPVVG PGETEKIAVA VVAPEPSSSS HAGNASSSNI  660
SSAALPDFEL LSVLLKNPEL VFALMNGQAG SLSSEDTVRL LDMIKANGVG SLGTLNGLGR  720
KAEEKVEVSL PSPTPSSNPV PVPSGWRPEF AKNPFSRQGL TVNSRDMYAS SPGVDFTGPA  780
RQVSMANIDI TGPPPQRQLP ATNLVLPPQT PAVIPPPQQP ANFPPLSQQP PPSAMLPSFS  840
LPQTTSVLPE KRLPSTVPSL HQNPPPNSSV LQSTTPEIVL NMNNFPAGGI PLPRLLAAAA  900
PSVRVETLSN HKPGSVVMNA PERGPISYSV PQMLPRPTRP LTQQQPSSML PPEPPHPLHH  960
TMPMGNLGPV PDSWRGRQGL ASNPLNQNNY NLPVGGALQH PPLTAPSRER NEYVFEDDFE  1020
TWSPEGSPSR TPEYMLGGHN PLEPRMSSGR NYGPERLRHQ HRNSSGYRDH NNKYGNRRWR  1080
DRRR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.6182	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems.
Uniprot	TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf primordia and floral buds.

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM450469	0.0	AM450469.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X023104.10, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010652054.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-164	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	F6HQ00	0.0	F6HQ00_VITVI; Uncharacterized protein
STRING	VIT_07s0104g01580.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4121	13	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-154	HB-other family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01010967001
Entrez Gene	100249358

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]