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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01010961001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 424aa MW: 46742.6 Da PI: 8.9599 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.2e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H GSVIVT01010961001 6 FVCEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00048 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ GSVIVT01010961001 82 WKCDKCSKKYAVQSDWKAHSKTC 104 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.26E-7 | 5 | 28 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 6.5E-5 | 6 | 28 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 82 | 47 | 77 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.8E-5 | 70 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.26E-7 | 77 | 102 | No hit | No description |
SMART | SM00355 | 150 | 82 | 102 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTTN EIRKRVYICP EPSCVHHNPA 60 RALGDLTGIK KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYK CDCGTIFSRR 120 DSFITHRAFC DALAEENNKV NQGLMANMGS NLQSQMPELI SNSSSGFNYL QDGKNGTQLS 180 GSANMSATAL LQKAAQMGAT ASNSINSPMM QKSFVSSMAA PELSSIRPSP YVTIQQQTNS 240 YDHHFQSQPD QSPLVGINGG GLPSQFLQKG PPEITPLFQT VSGSASMNND IGMFGNVFIG 300 GDQNSPFLKN MENEDSSSTS SLAQGRTVMA RSATGPSRFG GNGEGKDVTT LDLLGVGGSR 360 PVNLQEQQQR LELEAMSQHR MQAMTTFQQQ LSHGEPAIEQ GLYGIYDPIF PTQVVLTHHD 420 LMR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-35 | 78 | 141 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 4e-35 | 78 | 141 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.5850 | 0.0 | fruit| inflorescence |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM429706 | 0.0 | AM429706.1 Vitis vinifera contig VV78X144965.37, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017614907.1 | 1e-180 | PREDICTED: protein indeterminate-domain 2-like | ||||
TrEMBL | A0A1U8NUW4 | 1e-178 | A0A1U8NUW4_GOSHI; protein indeterminate-domain 2-like | ||||
STRING | VIT_07s0104g01620.t01 | 1e-166 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.2 | 3e-85 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01010961001 |