PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010860001
Common NameLOC100262260, VIT_11s0103g00650
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HB-PHD
Protein Properties Length: 728aa    MW: 82448.6 Da    PI: 9.9398
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010860001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox361.2e-115025441153
                        HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
           Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                         +e L ++F +n  ps++ re LAk+lgL+ ++V  WF+N R+
  GSVIVT01010860001 502 AVEKLRQAFGENELPSRDVRENLAKQLGLDYEKVNKWFKNARY 544
                        6799*************************************97 PP
2PHD35.42.4e-12239294151
                        SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                        +C+ C+   +  +++++lCd +C+ +fH+kCl+++le+e++p g   w+C+ C++k
  GSVIVT01010860001 239 ICAKCKLreAFPDNDIILCDgTCNCAFHQKCLDPPLETENIPPGdqGWFCKFCECK 294
                        588888854455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.66E-14229297IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.2E-11236295IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.14237294IPR019787Zinc finger, PHD-finger
SMARTSM002496.0E-8239292IPR001965Zinc finger, PHD-type
PfamPF006281.6E-9239294IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590240291IPR019786Zinc finger, PHD-type, conserved site
CDDcd155041.31E-30240291No hitNo description
Gene3DG3DSA:1.10.10.601.1E-13479543IPR009057Homeodomain-like
SuperFamilySSF466891.28E-10486544IPR009057Homeodomain-like
PROSITE profilePS5007113.054489549IPR001356Homeobox domain
SMARTSM003891.6E-10491553IPR001356Homeobox domain
CDDcd000861.15E-9492544No hitNo description
PfamPF000464.1E-9502544IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MRGTGKKAGH QESGKSCFPK RNIGPKLNAA LQIKNGSKIS QTRKCKPKSK SHAKTIGAIL  60
SKRTTTGSPS KGSRSGSTTR KLIHKKTLHK AIDTESSKKE SSSKLKGEKP PQISTNKNGE  120
TVDKNVKPQK LKKRGKRKRR KDNSELDEAS RLQRRTRYLL IKMKLEQNLI DAYSGEGWKG  180
HSREKIRPEK ELQRATKQIL KCKLGIRDAI RQLESLSSIG CIEDTAIASD GSVYHEHIIC  240
AKCKLREAFP DNDIILCDGT CNCAFHQKCL DPPLETENIP PGDQGWFCKF CECKMEILEA  300
MNAHLGTRFS VDSTWQDIFK EEAALPDGGS ALPYPEEDWP SDDSQDHDYD PERNENSCSI  360
STAGTEGNAS DDTNSSLSLS WSFEDEILSG SKRSGIISAD SDETSDCEII SGRRQRRAVD  420
YRKLYDEMFG KDAHANEQVS EDEDWGPANK RRREKESDAA STLITLYEGE KKLPNVETME  480
AKQKISSDPQ TKRPFSRIPL DAVEKLRQAF GENELPSRDV RENLAKQLGL DYEKVNKWFK  540
NARYIALKTR KAERAKQLQT SPRISKESRS EIVKDKTVDL VASRDNSSAS LVRALKNLKK  600
VRRRKNPKPI ITSPVKKKHH RRALLESPTN DKVTMEFDDD VSLKKQLKLL KEKSKRDKQR  660
VDFKEGTGVQ DAEKEMERLC QIKDKIEKLK QVILRLQCDK TNQWQDQSVI YVPVAELREK  720
GRFCITS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140KRGKRKRRK
2135140KRKRRK
3136141RKRRKD
4598604KKVRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.38640.0fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4773720.0AM477372.2 Vitis vinifera contig VV78X098968.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269263.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_010656753.10.0PREDICTED: pathogenesis-related homeodomain protein
SwissprotP487851e-160PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLD7UBI50.0D7UBI5_VITVI; Uncharacterized protein
STRINGVIT_11s0103g00650.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-161pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]